View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_high_10 (Length: 336)
Name: NF3289_high_10
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 32627196 - 32627504
Alignment:
| Q |
13 |
aatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627196 |
aatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagta |
32627295 |
T |
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| Q |
113 |
ggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627296 |
ggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaaca |
32627395 |
T |
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| Q |
213 |
acactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627396 |
acactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaaga |
32627495 |
T |
|
| Q |
313 |
gagaaatct |
321 |
Q |
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||||||||| |
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| T |
32627496 |
gagaaatct |
32627504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 320
Target Start/End: Original strand, 32708921 - 32709084
Alignment:
| Q |
157 |
tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg |
256 |
Q |
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||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
32708921 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg |
32709020 |
T |
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| Q |
257 |
ttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatc |
320 |
Q |
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||| |||||||| ||| |||||||||| ||| | ||||||||||||||||||||||| ||||| |
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| T |
32709021 |
ttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatc |
32709084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 32703483 - 32703579
Alignment:
| Q |
150 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttctt |
246 |
Q |
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|||||| ||||||| ||||||||| ||||||||| ||||||||| || |||||||| |||||||||||| ||||||| ||||| |||||||||||| |
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| T |
32703483 |
atcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatcttcgctttttctt |
32703579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 7297579 - 7297634
Alignment:
| Q |
255 |
tgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaa |
310 |
Q |
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||||| || |||||||||||||||||||| ||| || ||||||||||||||||||| |
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| T |
7297579 |
tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaa |
7297634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 322
Target Start/End: Original strand, 5810958 - 5811130
Alignment:
| Q |
150 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcct |
249 |
Q |
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|||||| | ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||| | |||||| |||| |
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| T |
5810958 |
atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcct |
5811057 |
T |
|
| Q |
250 |
acaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctg |
322 |
Q |
| |
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| |||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
5811058 |
aaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctg |
5811130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 322
Target Start/End: Original strand, 27736240 - 27736403
Alignment:
| Q |
159 |
tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt |
258 |
Q |
| |
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||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| || |||| |
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| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt |
27736339 |
T |
|
| Q |
259 |
ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctg |
322 |
Q |
| |
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| |||||| | | |||||||||| ||||| ||||||||| ||||||| ||||||||||| |
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| T |
27736340 |
agaatcatttgagctccttcaactaattctttggcacgacatcgaagaaaaaaagagaaatctg |
27736403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 320
Target Start/End: Complemental strand, 20116800 - 20116649
Alignment:
| Q |
169 |
accatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgc |
268 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||| ||||||| | | |||||| ||||| || |||| |||||||| |||||| | |||||||| |
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| T |
20116800 |
accatatcattaagagctgtagccaaaagttcccaaaggtaacaaaccccattgcttaatggatcatcactttctcttcctataaatgtcagaatcatgc |
20116701 |
T |
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| Q |
269 |
aacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatc |
320 |
Q |
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|||| |||||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
20116700 |
aacctccttcaaccaattctttggcacgacacttgagaaaaagagagaaatc |
20116649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 21943144 - 21943237
Alignment:
| Q |
228 |
tggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatct |
321 |
Q |
| |
|
||||||||||| || |||| ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||| |
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| T |
21943144 |
tggattgtcgcattctcttactaaaaatgttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatct |
21943237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 21943097 - 21943132
Alignment:
| Q |
169 |
accatgtcattaagagccatagccaaaagttcccaa |
204 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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| T |
21943097 |
accatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 321
Target Start/End: Complemental strand, 8030641 - 8030479
Alignment:
| Q |
159 |
tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt |
258 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| | ||| |||||||| || |||||||| ||||| | || || ||||||||||| | | ||| |
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| T |
8030641 |
tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcccaagattgtg |
8030542 |
T |
|
| Q |
259 |
ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatct |
321 |
Q |
| |
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| || ||| | |||||| ||||| | |||||| ||||||||||||||||| | ||||||||| |
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| T |
8030541 |
agaaccatacgacccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatct |
8030479 |
T |
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