View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_high_11 (Length: 333)
Name: NF3289_high_11
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 94 - 330
Target Start/End: Complemental strand, 25104199 - 25103963
Alignment:
| Q |
94 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatatttcaaatatgct |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25104199 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatattttaaatatgct |
25104100 |
T |
|
| Q |
194 |
atctagctagcttggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactaccgcaagtcataa |
293 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25104099 |
atctagctagctaggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactatcgcaagtcataa |
25104000 |
T |
|
| Q |
294 |
cttttctgcaaaacacatttccataaattttcatctc |
330 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |
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| T |
25103999 |
cttttctgcaaaacacatttccataacttttcttctc |
25103963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 94 - 330
Target Start/End: Complemental strand, 25163292 - 25163056
Alignment:
| Q |
94 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatatttcaaatatgct |
193 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25163292 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatattttaaatatgct |
25163193 |
T |
|
| Q |
194 |
atctagctagcttggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactaccgcaagtcataa |
293 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25163192 |
atctagctagctaggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactatcgcaagtcataa |
25163093 |
T |
|
| Q |
294 |
cttttctgcaaaacacatttccataaattttcatctc |
330 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||| |
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| T |
25163092 |
cttttctgcaaaacacatttccataacttttcttctc |
25163056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 8981069 - 8981008
Alignment:
| Q |
19 |
aattgttacaattctgctgtcatgaaagatgagttcaatacaattcgtgaaatactcgtgatg |
81 |
Q |
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|||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
8981069 |
aattgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatg |
8981008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 574139 - 574201
Alignment:
| Q |
19 |
aattgttacaattctgctgtcatgaaagatgagttcaatacaattcgtgaaatactcgtgatg |
81 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
574139 |
aattgttacaattctgctgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatg |
574201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2471837 - 2471898
Alignment:
| Q |
19 |
aattgttacaattctgctgtcatgaaagatgagttcaatacaattcgtgaaatactcgtgatg |
81 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
2471837 |
aattgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatg |
2471898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 27135036 - 27135097
Alignment:
| Q |
19 |
aattgttacaattctgctgtcatgaaagatgagttcaatacaattcgtgaaatactcgtgatg |
81 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
27135036 |
aattgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatg |
27135097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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