View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_high_13 (Length: 249)
Name: NF3289_high_13
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 55263235 - 55263464
Alignment:
| Q |
10 |
attgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcaggattatcaacct |
109 |
Q |
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| T |
55263235 |
attgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcaggattatcaacct |
55263334 |
T |
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| Q |
110 |
tcctcactaccttcaagcccaaagcctatgtaaatatgatccataagaac----atagcatcggttaataaaccacatttggtttaaataatgcataatt |
205 |
Q |
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| T |
55263335 |
tcctcaccaccttcaagcccaaagcctatgtaaatatgatccataagaacatatatagcatcggttaataaaccacatttggtttaaataatgcataatt |
55263434 |
T |
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| Q |
206 |
aaatcatacataactcatcaaatacaattctctg |
239 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
55263435 |
aaat----cataactcatcaaatacaattctctg |
55263464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 55270099 - 55270328
Alignment:
| Q |
10 |
attgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcaggattatcaacct |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270099 |
attgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcaggattatcaacct |
55270198 |
T |
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| Q |
110 |
tcctcactaccttcaagcccaaagcctatgtaaatatgatccataagaac----atagcatcggttaataaaccacatttggtttaaataatgcataatt |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270199 |
tcctcaccaccttcaagcccaaagcctatgtaaatatgatccataagaacatatatagcatcggttaataaaccacatttggtttaaataatgcataatt |
55270298 |
T |
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| Q |
206 |
aaatcatacataactcatcaaatacaattctctg |
239 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
55270299 |
aaat----cataactcatcaaatacaattctctg |
55270328 |
T |
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