View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3289_high_15 (Length: 247)
Name: NF3289_high_15
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36057279 - 36057518
Alignment:
| Q |
1 |
gtgattaggggctcgattcctgagagcgaaagtttcaaaaagttcttttaaaccacatagcaattctttttcaagaatgataaggttgagataagtagtg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057279 |
gtgattaggggttcgattcctgagagcgaaagtttcaaaaagttcttttaaaccacatagcaattctttttcaagaatgataaggttgagataagtagtg |
36057378 |
T |
|
| Q |
101 |
ttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057379 |
ttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaa |
36057478 |
T |
|
| Q |
201 |
gttagagtttcatgaagaattgattgtgcacttgcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36057479 |
gttagagtttcatgaagaattgattgtgcacttggctttg |
36057518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 28723708 - 28723808
Alignment:
| Q |
131 |
aaaggtaaatgaaacataagggagtacttatag-aaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgc |
229 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| | ||||||||||||||||||||||||||||| || |||||||||| ||| |||||| || ||||||| |
|
|
| T |
28723708 |
aaaggtaaagggaacataagggagtacatattggaaatgtctaatctcgcatcaaaactcaaggcactgaagttagaacttcctgaagatttaattgtgc |
28723807 |
T |
|
| Q |
230 |
a |
230 |
Q |
| |
|
| |
|
|
| T |
28723808 |
a |
28723808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 23070502 - 23070341
Alignment:
| Q |
73 |
aagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttat-agaaatgtct |
171 |
Q |
| |
|
||||||||||||||||| | |||| |||||||| || || |||||||||| | | ||||||||| | ||||||||||| ||| | | |||||||||| |
|
|
| T |
23070502 |
aagaatgataaggttgaaactagtattgttttatccaaacttatttcaatgagct-acaaaggtaaagggaacataagggaatacatcttagaaatgtct |
23070404 |
T |
|
| Q |
172 |
aatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttg |
234 |
Q |
| |
|
||||| || | ||||||||| || ||| ||||| ||| |||||| || |||||||||||| |
|
|
| T |
23070403 |
aatcttgccttcaaactcaaggcacggaatttagaacttcttgaagatttaattgtgcacttg |
23070341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University