View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_high_20 (Length: 237)
Name: NF3289_high_20
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_high_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18313416 - 18313655
Alignment:
| Q |
1 |
ccctatctttatctttccaaatacacatttttgtatcttaagtatattctcttctcttcaaagttagcataacacaaaaaagagga---tgggtaacacc |
97 |
Q |
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| T |
18313416 |
ccctatctttatctttccaaatacacatttttgtatcttaaatatattctcttctcttcaaagttagcataacacaaaaaagaggagaatgggtaacacc |
18313515 |
T |
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| Q |
98 |
aaactcctaaaagtactcatgttactcttgaccttaattcttgcaactaaagttatacaaggtctagtcatgtcatattgtcctactttatatactataa |
197 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18313516 |
aaactcccaaaagtactcatgttactcttgaccttaattcttgcagctaaagttatacaaggtctagtcatgtcatattgtcctactttatataccataa |
18313615 |
T |
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| Q |
198 |
ttcttcttttcttataaagttccaatgaattctcaccttc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18313616 |
ttcttcttttcttataaagttccaatgaattctcaccttc |
18313655 |
T |
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