View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3289_high_3 (Length: 576)
Name: NF3289_high_3
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Complemental strand, 7624405 - 7623860
Alignment:
| Q |
18 |
aagtagttaatttgtttttccctattcaaatagattgctgttgttatacgtacaaaacttatttatatccttaatccttaatcatcatcacatatatttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7624405 |
aagtagttaatttgtttttccctattcaaatagattgctgttgttatacgtacaaaacttatttatatccttaatccttaatcatcatcacatatatttc |
7624306 |
T |
|
| Q |
118 |
atatttcataaccatagccacatacataacataaattaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7624305 |
atatttcataaccatagccacatacataacataaattaaccatgtctctatggttcattgcaatagctagtttcacattatgcatcctcatataccgttt |
7624206 |
T |
|
| Q |
218 |
tatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7624205 |
tatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacac |
7624106 |
T |
|
| Q |
318 |
cagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7624105 |
cagtctattgcagccttggcaaaaatccatggccctttaatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaac |
7624006 |
T |
|
| Q |
418 |
aattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcacctta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7624005 |
aattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcccctta |
7623906 |
T |
|
| Q |
518 |
tggtccacggtggcgaatgctccgaaaaatctcctcagttcatctc |
563 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7623905 |
tggtccgaggtggcgaatgctccgaaaaatctcctccgttcatctc |
7623860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 153 - 563
Target Start/End: Original strand, 7659415 - 7659825
Alignment:
| Q |
153 |
ttaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7659415 |
ttaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccac |
7659514 |
T |
|
| Q |
253 |
ttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7659515 |
ttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaattcatggccc |
7659614 |
T |
|
| Q |
353 |
tttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7659615 |
tttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttctggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagc |
7659714 |
T |
|
| Q |
453 |
cggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcct |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7659715 |
cggccacccaacaccggagctaaatatatagcttataactatcaagaccttgtgtttgcaccttatggtccgcggtggcgaatgctccgaaaaatctcct |
7659814 |
T |
|
| Q |
553 |
cagttcatctc |
563 |
Q |
| |
|
||||||||||| |
|
|
| T |
7659815 |
cagttcatctc |
7659825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 158 - 548
Target Start/End: Original strand, 7675047 - 7675437
Alignment:
| Q |
158 |
catgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccacttcca |
257 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || ||||| ||| | ||||||||||| |||| ||||||| |||| |||||||||||||||| ||| |
|
|
| T |
7675047 |
catgtctctatggctcattgcattctctagttgcatattatcaatcttaatataccgtttggtgaagtttgcaacaagaacttcatcactaccactccca |
7675146 |
T |
|
| Q |
258 |
cctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttga |
357 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | |||||| | || ||||| |||||||| ||| ||||| ||||||| ||| | |||||||||||| |
|
|
| T |
7675147 |
cctggaccaaaaccatggccaataataggtaacttaccacaccttggccctgcaccacaccaatctcttgcaaccttggctgaaacctatggccctttga |
7675246 |
T |
|
| Q |
358 |
tgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggcc |
457 |
Q |
| |
|
|||||||||||||||| | ||||| || |||||||||||||| | |||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7675247 |
tgcacctcaaattaggctcggtggatgtgatcgtggcggcttcggcctccgtggcggaacaattcttaaaggtacatgatgctaactttagtagccggcc |
7675346 |
T |
|
| Q |
458 |
acccaacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatc |
548 |
Q |
| |
|
|||||| |||||||||| || |||| |||||| |||||||| |||||||||| |||||||||||| |||||||| | ||| |||||||| |
|
|
| T |
7675347 |
acccaatgccggagctaagtacataggttataattatcaagaccttgtgtttggtccttatggtccaaggtggcgactactcagaaaaatc |
7675437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 393 - 532
Target Start/End: Original strand, 45477623 - 45477762
Alignment:
| Q |
393 |
gcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataact |
492 |
Q |
| |
|
|||||||| | ||| || || |||||||||||||| ||||||||| | || ||| |||||||||| | ||| |||| || ||||| |||| ||||| | |
|
|
| T |
45477623 |
gcggcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataatt |
45477722 |
T |
|
| Q |
493 |
atcaagatcttgtgtttgcaccttatggtccacggtggcg |
532 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
45477723 |
atcaagatcttgtttttgctccttatggaccacggtggcg |
45477762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University