View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3289_high_6 (Length: 459)
Name: NF3289_high_6
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 41628448 - 41628895
Alignment:
| Q |
1 |
atgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgtcataacctatagtataataaataataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41628448 |
atgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttgtgaagaaagttggtgtcataacctatagtataataaataataa |
41628547 |
T |
|
| Q |
101 |
agaaataaggaatagttcaaattttgagtcaaacttagtgcataaacattcagatttaagagcatatatgttagcttataaacaaaactatgtagtttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41628548 |
agaaataaggaatagttcaaattttgagtcaaacttggtgcataaacattcagatttaagagcatatatgttagcttataaacaaaactatgtagtttac |
41628647 |
T |
|
| Q |
201 |
agaaatgtactttgaaggccaaaaatgaaggnnnnnnngcacaatttctaaatatttatttagtaaagggaaactattaaccttcaatttttctgaatgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41628648 |
agaaatgtactttgaaggccaaaaatgaaggaaaaaaagcacaatttctaaatatttatttagtaaagggaaactaataaccttcaatttttctgaatgg |
41628747 |
T |
|
| Q |
301 |
aaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaacttgaaaatcttatgattattctttg |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41628748 |
aaagcggggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaacttgaaaatcttatgattattctttg |
41628847 |
T |
|
| Q |
401 |
gaaagtcagagatattgttcaatacatctatgatttgcacaggttctg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41628848 |
gaaagtcagagatattgttcaatacatctatgatttgctcaggttctg |
41628895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 448
Target Start/End: Complemental strand, 30393975 - 30393805
Alignment:
| Q |
278 |
taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt |
377 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||| |||||||||| |
|
|
| T |
30393975 |
taaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctcccccataactagcaagaccactagctagtaactt |
30393876 |
T |
|
| Q |
378 |
gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgcacaggttctg |
448 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| || ||||||||||||||| | |||||| ||||||||| |
|
|
| T |
30393875 |
gaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctg |
30393805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 278 - 448
Target Start/End: Complemental strand, 30383824 - 30383654
Alignment:
| Q |
278 |
taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt |
377 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||| || || |||||||||| |
|
|
| T |
30383824 |
taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtgcattagctagtaactt |
30383725 |
T |
|
| Q |
378 |
gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgcacaggttctg |
448 |
Q |
| |
|
||||||||| | |||| |||||| || ||||| || |||||||| |||||| | |||||| ||||||||| |
|
|
| T |
30383724 |
gaaaatcttgtaattaggctttgggaattcagacatcttgttcaacacatcttttatttgctcaggttctg |
30383654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 30467927 - 30467833
Alignment:
| Q |
281 |
ccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaac |
375 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||| | |||| ||||||||||||| |||||||||||||||| |||||||| || |||||||| |
|
|
| T |
30467927 |
ccttcaatttttctaaatggaatgcaggattgattatctttctgtgcttgctccactgttctccctcaagacttacaagaccattagctagtaac |
30467833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 385
Target Start/End: Original strand, 8381668 - 8381775
Alignment:
| Q |
278 |
taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt |
377 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||| |||| |||||||||||| ||||||||||||||||| || || ||||||||||| ||| || || |
|
|
| T |
8381668 |
taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaattt |
8381767 |
T |
|
| Q |
378 |
gaaaatct |
385 |
Q |
| |
|
|||||||| |
|
|
| T |
8381768 |
gaaaatct |
8381775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 30429983 - 30429870
Alignment:
| Q |
261 |
tagtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaaga |
360 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||| ||||||||||| | | |||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
30429983 |
tagtaaagggaaacttt---ccttcaatttttctacatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcatgacttgcaagg |
30429887 |
T |
|
| Q |
361 |
ccactaactagtaactt |
377 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
30429886 |
ccattagctagtaactt |
30429870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 377
Target Start/End: Complemental strand, 30423949 - 30423837
Alignment:
| Q |
262 |
agtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagac |
361 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||| ||||||||||| | | |||| ||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
30423949 |
agtaaagggaaacttt---ccttcaatttttctaaatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcatgacttataagac |
30423853 |
T |
|
| Q |
362 |
cactaactagtaactt |
377 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
30423852 |
cattagctagtaactt |
30423837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 30436154 - 30436043
Alignment:
| Q |
261 |
tagtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaaga |
360 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| ||||| || |||| | |||| ||||||||||||| |||||||||||||| | ||||| |
|
|
| T |
30436154 |
tagtaaagggaaactt---accttcaatttttctaaatggaatgcaggatttattatctttctgtgcttgctccactgttctccctcaagacatacaaga |
30436058 |
T |
|
| Q |
361 |
ccactaactagtaac |
375 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
30436057 |
ccacaacctagtaac |
30436043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 348
Target Start/End: Complemental strand, 30482234 - 30482150
Alignment:
| Q |
261 |
tagtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctca |
348 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| ||||| || |||| | |||||||||||||||||||||| |||||| |
|
|
| T |
30482234 |
tagtaaagggaaacta---accttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttcaccctca |
30482150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30394124 - 30394059
Alignment:
| Q |
1 |
atgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaag |
66 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| | ||| ||||||||| ||||||||| |
|
|
| T |
30394124 |
atgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaacttgtgaagaaag |
30394059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 23767352 - 23767286
Alignment:
| Q |
278 |
taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctcc |
344 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23767352 |
taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttggtccacttttctcc |
23767286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 23767714 - 23767620
Alignment:
| Q |
3 |
gatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgtcataacctatagtataataaataa |
97 |
Q |
| |
|
||||||| || ||||||| |||| ||||| || ||||| ||||||||||| ||| | ||||| ||||||||||||| |||| || |||||||||| |
|
|
| T |
23767714 |
gatccatttgaagacaacgtttcttcccaattgctaatcaaatcgttgcagcttttcaagaatgttggtgtcataatctatggtgtaataaataa |
23767620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30383995 - 30383930
Alignment:
| Q |
1 |
atgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaag |
66 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||| ||||||||| |
|
|
| T |
30383995 |
atgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaacttgtgaagaaag |
30383930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 23796872 - 23796789
Alignment:
| Q |
14 |
agacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgtcataacctatagtataataaataa |
97 |
Q |
| |
|
||||||| |||| ||||| || ||||| ||||||||||| ||| | ||||| ||||||||||||| |||| || |||||||||| |
|
|
| T |
23796872 |
agacaacgtttcttcccaattgctaatcaaatcgttgcagcttttcaagaatgttggtgtcataatctatggtgtaataaataa |
23796789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 23784775 - 23784841
Alignment:
| Q |
278 |
taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctcc |
344 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23784775 |
taaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctcc |
23784841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 23796515 - 23796479
Alignment:
| Q |
308 |
ggttgattagccttctatgcttgctccacttttctcc |
344 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23796515 |
ggttgattatccttctatgcttgctccacttttctcc |
23796479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 30475054 - 30474960
Alignment:
| Q |
281 |
ccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaac |
375 |
Q |
| |
|
|||||||||||||| || ||| || || || |||||| |||| ||||||||||||||||| ||||| || || |||||||| || |||||||| |
|
|
| T |
30475054 |
ccttcaatttttctatattgaatgccggattaattagctttctgtgcttgctccacttttcgccctcgaggtttacaagaccattagctagtaac |
30474960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23784363 - 23784440
Alignment:
| Q |
1 |
atgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgtcataa |
78 |
Q |
| |
|
||||||||| || ||||||||||| ||||| || ||||| ||||| ||||| ||| | ||||| ||||||||||||| |
|
|
| T |
23784363 |
atgatccatttgaagacaacattttttcccaattgctaatcaaatcattgcagcttttcaagaatgttggtgtcataa |
23784440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University