View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3289_low_10 (Length: 336)

Name: NF3289_low_10
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3289_low_10
NF3289_low_10
[»] chr8 (4 HSPs)
chr8 (13-321)||(32627196-32627504)
chr8 (157-320)||(32708921-32709084)
chr8 (150-246)||(32703483-32703579)
chr8 (255-310)||(7297579-7297634)
[»] chr4 (1 HSPs)
chr4 (150-322)||(5810958-5811130)
[»] chr3 (1 HSPs)
chr3 (159-322)||(27736240-27736403)
[»] chr6 (3 HSPs)
chr6 (169-320)||(20116649-20116800)
chr6 (228-321)||(21943144-21943237)
chr6 (169-204)||(21943097-21943132)
[»] chr5 (1 HSPs)
chr5 (159-321)||(8030479-8030641)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 32627196 - 32627504
Alignment:
Q  13 aatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627196 aatatcatcaaattaacatttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagta 32627295  T
Q  113 ggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627296 ggaatgggtcgtgacccatcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaaca 32627395  T
Q  213 acactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627396 acactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaaga 32627495  T
Q  313 gagaaatct 321  Q
    |||||||||    
T  32627496 gagaaatct 32627504  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 320
Target Start/End: Original strand, 32708921 - 32709084
Alignment:
Q  157 tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg 256  Q
    ||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||       ||||| ||||||||||||| |||||    
T  32708921 tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg 32709020  T
Q  257 ttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatc 320  Q
    ||| |||||||| ||| |||||||||| ||| |  ||||||||||||||||||||||| |||||    
T  32709021 ttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatc 32709084  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 32703483 - 32703579
Alignment:
Q  150 atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttctt 246  Q
    |||||| ||||||| ||||||||| ||||||||| ||||||||| || |||||||| |||||||||||| ||||||| |||||  ||||||||||||    
T  32703483 atcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatcttcgctttttctt 32703579  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 7297579 - 7297634
Alignment:
Q  255 tgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaa 310  Q
    ||||| || |||||||||||||||||||| ||| || |||||||||||||||||||    
T  7297579 tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaa 7297634  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 322
Target Start/End: Original strand, 5810958 - 5811130
Alignment:
Q  150 atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcct 249  Q
    |||||| | ||||| ||| ||||| |||||||||||||||||||  |||||||||||||||| | |||||||||||| |||||    | |||||| ||||    
T  5810958 atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcct 5811057  T
Q  250 acaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctg 322  Q
    | |||||||| |||||||  ||| |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  5811058 aaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctg 5811130  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 322
Target Start/End: Original strand, 27736240 - 27736403
Alignment:
Q  159 tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt 258  Q
    ||||| ||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| || ||||    
T  27736240 tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt 27736339  T
Q  259 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctg 322  Q
    | ||||||   | | |||||||||| ||||| |||||||||    ||||||| |||||||||||    
T  27736340 agaatcatttgagctccttcaactaattctttggcacgacatcgaagaaaaaaagagaaatctg 27736403  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 320
Target Start/End: Complemental strand, 20116800 - 20116649
Alignment:
Q  169 accatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgc 268  Q
    ||||| |||||||||||  |||||||||||||||||| |||||||  | | ||||||  |||||  || |||| |||||||| |||||| | ||||||||    
T  20116800 accatatcattaagagctgtagccaaaagttcccaaaggtaacaaaccccattgcttaatggatcatcactttctcttcctataaatgtcagaatcatgc 20116701  T
Q  269 aacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatc 320  Q
    |||| |||||||| | ||||| ||||||||||||||||||||||||||||||    
T  20116700 aacctccttcaaccaattctttggcacgacacttgagaaaaagagagaaatc 20116649  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 21943144 - 21943237
Alignment:
Q  228 tggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatct 321  Q
    ||||||||||| || |||| ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||    
T  21943144 tggattgtcgcattctcttactaaaaatgttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatct 21943237  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 21943097 - 21943132
Alignment:
Q  169 accatgtcattaagagccatagccaaaagttcccaa 204  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21943097 accatatcattaagagccatagccaaaagttcccaa 21943132  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 321
Target Start/End: Complemental strand, 8030641 - 8030479
Alignment:
Q  159 tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt 258  Q
    |||||||||||||||||||||||| || | ||| | ||| |||||||| || |||||||| |||||   |  ||  || ||||||||||| |  | |||     
T  8030641 tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcccaagattgtg 8030542  T
Q  259 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatct 321  Q
    | || ||| | |||||| ||||| | |||||| ||||||||||||||||| |  |||||||||    
T  8030541 agaaccatacgacccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatct 8030479  T

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