View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_12 (Length: 299)
Name: NF3289_low_12
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_12 |
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| [»] chr3 (6 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 56 - 299
Target Start/End: Complemental strand, 38033476 - 38033233
Alignment:
| Q |
56 |
tatcgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggc |
155 |
Q |
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| T |
38033476 |
tatcgaacaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggc |
38033377 |
T |
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| Q |
156 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaactgcttc |
255 |
Q |
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| T |
38033376 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttc |
38033277 |
T |
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| Q |
256 |
ttcatctaggaagatctattaagctaaaatgaaaaaagaaagct |
299 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
38033276 |
ttcatctagggagagatattaagctaaaatgaaaaaagaaagct |
38033233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 59 - 299
Target Start/End: Complemental strand, 38028439 - 38028199
Alignment:
| Q |
59 |
cgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggccta |
158 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
38028439 |
cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggccta |
38028340 |
T |
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| Q |
159 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttc |
258 |
Q |
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| T |
38028339 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttc |
38028240 |
T |
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| Q |
259 |
atctaggaagatctattaagctaaaatgaaaaaagaaagct |
299 |
Q |
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| T |
38028239 |
atctaggaagatctattaagctaaaatgaaaaaagaaagct |
38028199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 50910450 - 50910577
Alignment:
| Q |
85 |
tataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattata |
184 |
Q |
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| T |
50910450 |
tataatgatgacataagagaatgtgctgtaagcaatatcgagct-cgaatattcctgcaaatttct--ggcctaat---aaaacattcagccaaactaaa |
50910543 |
T |
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| Q |
185 |
atagttgataggttatcttagatctaagctcacaa |
219 |
Q |
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| T |
50910544 |
gtagttgataag-tatcttggatctaagctcacaa |
50910577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 219
Target Start/End: Complemental strand, 38036444 - 38036314
Alignment:
| Q |
84 |
ttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattat |
183 |
Q |
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|||||||||||| |||||||||| | ||||||| | | ||||| || |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| |
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| T |
38036444 |
ttataatgatgagataagggtatgtgctgtaagcagtatcgag-atcgaatattcctgcaaatttctctgac---ataataacacattcagccaaactat |
38036349 |
T |
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| Q |
184 |
aatagttgataggttatcttagatctaagctcacaa |
219 |
Q |
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| T |
38036348 |
-atagtgtataagctatcttggatcaaagctcacaa |
38036314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 38039652 - 38039520
Alignment:
| Q |
165 |
aaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctag |
264 |
Q |
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||||||||| ||||| | |||||||||||| ||||| || |||||||||||| | |||||||| ||||||||||||||| |||||||||||| |
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| T |
38039652 |
aaacattcaaccaaactgtaatagttgataagttatattcgatctaagctca-atttcttttacatgtcctgtgcttctatcaactgattcttcatctag |
38039554 |
T |
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| Q |
265 |
gaagatctattaagctaaaatgaaaaaagaaagct |
299 |
Q |
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| T |
38039553 |
gcaaaacaactaagctaaaat-aaataagaaagct |
38039520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38033531 - 38033496
Alignment:
| Q |
1 |
tatttataaattataaaactagtgattccttgaaat |
36 |
Q |
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| T |
38033531 |
tatttataaattataaaactggtgattccttgaaat |
38033496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 59 - 299
Target Start/End: Complemental strand, 21604427 - 21604187
Alignment:
| Q |
59 |
cgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggccta |
158 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
21604427 |
cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggccta |
21604328 |
T |
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| Q |
159 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttc |
258 |
Q |
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| T |
21604327 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttc |
21604228 |
T |
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| Q |
259 |
atctaggaagatctattaagctaaaatgaaaaaagaaagct |
299 |
Q |
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| T |
21604227 |
atctagggagagctattaagctaaaatgaaaaaagaaagct |
21604187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 21609370 - 21609238
Alignment:
| Q |
165 |
aaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctag |
264 |
Q |
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||||||||| ||||| | |||||||||||| ||||| || |||||||||||| | |||||||| ||||||||||||||| |||||||||||| |
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| T |
21609370 |
aaacattcaaccaaactgtaatagttgataagttatattcgatctaagctca-atttcttttacatgtcctgtgcttctatcaactgattcttcatctag |
21609272 |
T |
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| Q |
265 |
gaagatctattaagctaaaatgaaaaaagaaagct |
299 |
Q |
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| | | | | ||||||||||| ||| ||||||||| |
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| T |
21609271 |
gcaaaacaactaagctaaaat-aaataagaaagct |
21609238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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