View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_15 (Length: 248)
Name: NF3289_low_15
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 25103192 - 25103073
Alignment:
| Q |
119 |
ccttatgtgcaaaacccggcatatataaactctattcttcagtgaacttggttatggtttcgacttaaaacataataccatttaagagtacaaacttgta |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25103192 |
ccttttgtgcaaaacccggcatatataaactctattcttcagtgaacttggttatggtttcgacttaaaacataataccatttaagagtacaaacttgta |
25103093 |
T |
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| Q |
219 |
taagccatatatgtattcat |
238 |
Q |
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|||||||||||||||||||| |
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| T |
25103092 |
taagccatatatgtattcat |
25103073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 25162285 - 25162166
Alignment:
| Q |
119 |
ccttatgtgcaaaacccggcatatataaactctattcttcagtgaacttggttatggtttcgacttaaaacataataccatttaagagtacaaacttgta |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25162285 |
ccttttgtgcaaaacccggcatatataaactctattcttcagtgaacttggttatggtttcgacttaaaacataataccatttaagagtacaaacttgta |
25162186 |
T |
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| Q |
219 |
taagccatatatgtattcat |
238 |
Q |
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|||||||||||||||||||| |
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| T |
25162185 |
taagccatatatgtattcat |
25162166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 25103912 - 25103783
Alignment:
| Q |
1 |
tatgaacttatattcacttcacacaagttcatattacaaaccatacatgaaatctgacgagcaagtcatttagacaatacacgatac----atccaaaaa |
96 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
25103912 |
tatgaatttatattcacttcacacaaattcatattacaaaccatacatgaaatctgacaagcaagtcatttagacaatacacgatacatatatccaaaaa |
25103813 |
T |
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| Q |
97 |
ttcaagaaaatagaaagtcaatccttatgt |
126 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25103812 |
ttcaagaaaatagaaagtcaatccttatgt |
25103783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 25163005 - 25162876
Alignment:
| Q |
1 |
tatgaacttatattcacttcacacaagttcatattacaaaccatacatgaaatctgacgagcaagtcatttagacaatacacgatac----atccaaaaa |
96 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
25163005 |
tatgaatttatattcacttcacacaaattcatattacaaaccatacatgaaatctgacaagcaagtcatttagacaatacacgatacatatatccaaaaa |
25162906 |
T |
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| Q |
97 |
ttcaagaaaatagaaagtcaatccttatgt |
126 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25162905 |
ttcaagaaaatagaaagtcaatccttatgt |
25162876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25217444 - 25217336
Alignment:
| Q |
1 |
tatgaacttatattcacttcacacaagttcatattacaaaccatacatgaaatctgacgagcaagtcatttagacaatacacgatacatccaaaaattca |
100 |
Q |
| |
|
|||||| || ||||| ||| ||||| ||||||||| |||||||||||||| | || ||||||||||||| ||| ||| || ||||||||||| ||| |
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| T |
25217444 |
tatgaaattgtattcgtttcccacaaattcatattagaaaccatacatgaacaccaacaagcaagtcatttaaacattactagacacatccaaaaa-tca |
25217346 |
T |
|
| Q |
101 |
agaaaataga |
110 |
Q |
| |
|
|||||||||| |
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|
| T |
25217345 |
agaaaataga |
25217336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25281599 - 25281491
Alignment:
| Q |
1 |
tatgaacttatattcacttcacacaagttcatattacaaaccatacatgaaatctgacgagcaagtcatttagacaatacacgatacatccaaaaattca |
100 |
Q |
| |
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|||||| || ||||| ||| ||||| ||||||||| |||||||||||||| | || ||||||||||||| ||| ||| || ||||||||||| ||| |
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| T |
25281599 |
tatgaaattgtattcgtttcccacaaattcatattagaaaccatacatgaacaccaacaagcaagtcatttaaacattactagacacatccaaaaa-tca |
25281501 |
T |
|
| Q |
101 |
agaaaataga |
110 |
Q |
| |
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|||||||||| |
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|
| T |
25281500 |
agaaaataga |
25281491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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