View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_17 (Length: 244)
Name: NF3289_low_17
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 6869638 - 6869430
Alignment:
| Q |
17 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
6869638 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacttgtaaaatcaaaagaaatgataa |
6869539 |
T |
|
| Q |
117 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
6869538 |
attaatagtcacttacccctttctaatccatcaaaagattaacag-ttttgaagtctctatgtataatgttgttttgatgcaaataaggaagagtaagca |
6869440 |
T |
|
| Q |
217 |
caaccttttg |
226 |
Q |
| |
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|||| ||||| |
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| T |
6869439 |
caacgttttg |
6869430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 3106497 - 3106706
Alignment:
| Q |
17 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
3106497 |
aatatacacaactagagttttagagtgatttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatggcaa |
3106596 |
T |
|
| Q |
117 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagca |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
3106597 |
attaatagtcacttacccctttctcatccatcaaaagatttacag-ttttgaggtctctatgtataatgttgttttgatgcaaataaggaagagtaagca |
3106695 |
T |
|
| Q |
217 |
caaccttttgt |
227 |
Q |
| |
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||||||||||| |
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| T |
3106696 |
caaccttttgt |
3106706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 41222247 - 41222038
Alignment:
| Q |
17 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
41222247 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattaactaagaacaagaacctgtaaaatcaaaagaaatgacaa |
41222148 |
T |
|
| Q |
117 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaagca |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | |
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| T |
41222147 |
attaatagtcacttacccctttctcatccatcaaaatactaaca-tttttgaggtctctatgtataatgatgttttgatgcaaataaggaagagtaagta |
41222049 |
T |
|
| Q |
217 |
caaccttttgt |
227 |
Q |
| |
|
||||||||||| |
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|
| T |
41222048 |
caaccttttgt |
41222038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 8449961 - 8450147
Alignment:
| Q |
17 |
aatatacacaactagagttttagagtggtttatattgttatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
8449961 |
aatatacacaactacagttttagagtggtttatattgttatagtatgatttgaaagcattattcaagaacaagaacctgtaaaatcaaaagaaatgacaa |
8450060 |
T |
|
| Q |
117 |
attaatagtcacttacccctttctaatccatcaaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataag |
204 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
8450061 |
attaatagtcacttacccctttctcatccatcaaaagattagcag-ttttgaggtctcgatgtataatgttgttttgatgcaaataag |
8450147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 48731046 - 48731258
Alignment:
| Q |
20 |
atacacaactagagttttagagtggtttatattgt-tatagtatgatttgaaagcattacctaagaacaagaacctgtaaaatgaaaagaaatgacaaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||| |
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| T |
48731046 |
atacacaactagagttttagagtggtttatattttatatagtatgatttgaaagcatcaactaagaacaagaacttgtaaaattcaaagaaatgacaaat |
48731145 |
T |
|
| Q |
119 |
taatagtcacttacccctttctaatccatc-----aaaagattaacagtttttgaggtctctgtgtataatgttgttttgatgcaaataaggaagaggaa |
213 |
Q |
| |
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|||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||| | |
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| T |
48731146 |
taatagtcacttacccatttctcatccatcaaaagaaaagattaacag-ttttgaggtctgtatgaataatgttgttttgatgcaaataaggaagagtga |
48731244 |
T |
|
| Q |
214 |
gcacaaccttttgt |
227 |
Q |
| |
|
|||||||||||||| |
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|
| T |
48731245 |
gcacaaccttttgt |
48731258 |
T |
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