View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_18 (Length: 243)
Name: NF3289_low_18
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18313409 - 18313183
Alignment:
| Q |
1 |
aatgtggtgttgtggtgaattagtgaccataagagatagactggcaaaatctgcactaagacagaggaacatgatcnnnnnnnggtactgaatgctgact |
100 |
Q |
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| T |
18313409 |
aatgtggtgttgtggtgaattagtgaccataagagatagactggcaaagtctgcactaagacagaggaacatgatcaaaaaaaggtactgaatgctgact |
18313310 |
T |
|
| Q |
101 |
atagtggctaactcataggaaattctaggtccaattagaattactagattgcccatagtgaagacaatgatgatagtgattgatttggtatttggtttgg |
200 |
Q |
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| T |
18313309 |
atagtggctaactcataggaaattctaggtccaattagaattactagattgcccatagtgaagacaatgatgatagtgattgatttggtatttggtttgg |
18313210 |
T |
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| Q |
201 |
gtaaatatggtgtttcaataataaaga |
227 |
Q |
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||||| |||||||||||||| |||||| |
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| T |
18313209 |
gtaaaaatggtgtttcaatagtaaaga |
18313183 |
T |
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