View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_19 (Length: 237)
Name: NF3289_low_19
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 55263093 - 55262873
Alignment:
| Q |
1 |
caggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctata |
100 |
Q |
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| T |
55263093 |
caggttagttcataagttaaattatatgaccttgaagcttaaactagctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctata |
55262994 |
T |
|
| Q |
101 |
acagattgccattggtactgatgatgtctacaagagtgctgatgtagtcaacgtagtcacacaagagcttggtggggagatcactctgcaaccagggcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
55262993 |
acagattgccattggtactgatgatgtctacaagagtgctgatgtagtcaacctagtcacacaagagcttggaggggagatcactctgcaaccagggcca |
55262894 |
T |
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| Q |
201 |
attcctggccttaacacaaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
55262893 |
attcctggccttaacacaaag |
55262873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 55269957 - 55269738
Alignment:
| Q |
1 |
caggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctata |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||| | | ||||||||||||||||||||||||||| |
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| T |
55269957 |
caggttagttcataagttaaattatatgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatg |
55269858 |
T |
|
| Q |
101 |
acagattgccattggtactgatgatgtctacaagagtgctgatgtagtcaacgtagtcacacaagagcttggtggggagatcactctgcaaccagggcca |
200 |
Q |
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| T |
55269857 |
acagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggcca |
55269758 |
T |
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| Q |
201 |
attcctggccttaacacaaa |
220 |
Q |
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||||| |||||||||||||| |
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| T |
55269757 |
attcccggccttaacacaaa |
55269738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 8301029 - 8300900
Alignment:
| Q |
92 |
gtgtctataacagattgccattggtactgatgatgtctacaagagtgctgatgtagtcaacgtagtcacacaagagcttggtggggagatcactctgcaa |
191 |
Q |
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|||| |||||||| |||| |||| || |||||||| ||||||||||| || |||||||| ||| ||| ||||| |||| ||| |||| || |||| |
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| T |
8301029 |
gtgtatataacaggttgctgttggcaccgatgatgtatacaagagtgccgagttagtcaacctagccactcaagaatttggagggaagattaccaggcaa |
8300930 |
T |
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| Q |
192 |
ccagggccaattcctggccttaacacaaag |
221 |
Q |
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| T |
8300929 |
ccagggccaatccctggcctcaacacaaag |
8300900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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