View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_4 (Length: 521)
Name: NF3289_low_4
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 6310246 - 6309845
Alignment:
| Q |
1 |
tgggactggaagagtcagtgctgaaaccattggaaggatgtctgaagggtgctgttggcgatggtgtggcggtcaaaggatacgttgatttggacacaac |
100 |
Q |
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||||||||||||||||| ||||||||||||| ||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6310246 |
tgggactggaagagtcaatgctgaaaccatttgaaggatttctgaagggtacttttggcgatggtgtgccggtcaaaggatacgttgatttggacacaac |
6310147 |
T |
|
| Q |
101 |
atgcggtaaaggagggaatgtgaagatgattaaggtaaggtactttgtcatt----gattcttggtctgtttataatgttgttattggcttgcctgctgt |
196 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6310146 |
attcggtaaaggagggaatgtgaagatgattaaggtaaggtactttgtcattaattgattcttggtctgtttataatgttgttattggcttgcctgctgt |
6310047 |
T |
|
| Q |
197 |
tgctgatttgggagcggtgatctcaacgttacacctcacaatgaaatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatggag |
296 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
6310046 |
tgctgatttgggagcggtgatctcaacgttacacctcacaatgaaatatcctattggagatggaatggtcggacttgtcaaggcagacctcgagatggcg |
6309947 |
T |
|
| Q |
297 |
aaaaagtgttatgagatgtgccctacggctatttaggtgtttctttcaattttcaacaac-taagaaaaactgtcttatatatgttaggagtagtatgtt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
6309946 |
aaaaagtgttatgagatgtgccctacggctatttaggtgtttctttcaattttcaacaacttaagaaaaaatgtcttatatatgttaggagtagtatgtt |
6309847 |
T |
|
| Q |
396 |
ta |
397 |
Q |
| |
|
|| |
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|
| T |
6309846 |
ta |
6309845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 6307007 - 6306930
Alignment:
| Q |
429 |
tgcatctttccaacaccatcatcggaagatacagagtattgtttgagtcctaagaatccttggtaccttccaccaatg |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6307007 |
tgcatctttccaacaccatcatcggaagatacagagtattgtttgagtcctaagaatccttggtaccttccaccaatg |
6306930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 351
Target Start/End: Complemental strand, 6323754 - 6323564
Alignment:
| Q |
166 |
tttataatgttgttattggcttgcctgctgttgctgatttgggagcggtgatctcaacgttacacctcacaatgaaatatcctattggagatggaatggt |
265 |
Q |
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|||||||||||||||||||| || | |||||||||||| ||| ||||||||||| |||||||||| |||||||||||| |||||||||||||| |
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| T |
6323754 |
tttataatgttgttattggcaggctgacagttgctgatttgagagatgtgatctcaaccctacacctcaccatgaaatatcctgccggagatggaatggt |
6323655 |
T |
|
| Q |
266 |
cggagttgtcaaggcagacctcgagatggagaaaaagtgttatgagatgtgccctacggct-----atttaggtgtttctttcaattttca |
351 |
Q |
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||||||||||||||||||| | || |||| ||||| ||||| || |||||||| | |||| ||||||||||||||||| ||||||| |
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| T |
6323654 |
cggagttgtcaaggcagacttggatatggccaaaaattgttaggatatgtgccccatggctttttaatttaggtgtttctttcgattttca |
6323564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 6327015 - 6326962
Alignment:
| Q |
241 |
aatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatgg |
294 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
6327015 |
aatatcctgttggagatggaaaggtcggtgttgtcgaggcagacctcgagatgg |
6326962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 6326207 - 6326132
Alignment:
| Q |
429 |
tgcatctttccaacaccatcatcggaagatacagagtattgtttgagtcctaagaatccttggtaccttccaccaa |
504 |
Q |
| |
|
|||||||||||| |||| || | ||||||||| ||||||||||| ||||||||||| || ||||||||| ||||| |
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| T |
6326207 |
tgcatctttccagcaccgacacctgaagatacaaagtattgtttgtgtcctaagaatactcggtaccttcaaccaa |
6326132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 6330015 - 6329939
Alignment:
| Q |
231 |
ctcacaatgaaatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatggagaaaaagtgtta |
307 |
Q |
| |
|
||||| |||||||||||| |||||||||||| ||| |||||||| | |||||| || ||||||| || |||||||| |
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| T |
6330015 |
ctcaccatgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgtta |
6329939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 6316943 - 6316868
Alignment:
| Q |
429 |
tgcatctttccaacaccatcatcggaagatacagagtattgtttgagtcctaagaatccttggtaccttccaccaa |
504 |
Q |
| |
|
|||||||||||| |||| | || ||||||||| ||||||||||| ||||||||||| | ||||||||| ||||| |
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| T |
6316943 |
tgcatctttccagcaccgacgtctgaagatacaaagtattgtttgtgtcctaagaatacccggtaccttcaaccaa |
6316868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 6323903 - 6323753
Alignment:
| Q |
1 |
tgggactggaagagtcagtgctgaaaccattggaaggatgtctgaagggtgctgttggcgatggtgtggcggtcaaaggatacgttgatttggacacaac |
100 |
Q |
| |
|
|||||||| |||| || ||||||||||||| |||| || ||| ||||||| | | || ||||||| | || |||||||| |||||||||||||||| |
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| T |
6323903 |
tgggactgttagagacaatgctgaaaccattagaagcatatctcaagggtgttatcggaaatggtgtaccagtgaaaggatatattgatttggacacaac |
6323804 |
T |
|
| Q |
101 |
atgcggtaaaggagggaatgtgaagatgattaaggtaaggtactttgtcatt |
152 |
Q |
| |
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|| ||| ||| ||||||| | || ||||| ||||| |||||||| |||||| |
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| T |
6323803 |
attcggaaaatgagggaa-gccaaaatgatcaaggtgaggtacttcgtcatt |
6323753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 6330140 - 6330064
Alignment:
| Q |
108 |
aaaggagggaatgtgaagatgattaaggtaaggtactttgtcattgattcttggtctgtttataatgttgttattgg |
184 |
Q |
| |
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||||| ||||||| |||||||| ||||| |||||||| ||| ||||||| ||| ||||||||||||||||||| |
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| T |
6330140 |
aaaggtgggaatgccaagatgatcaaggtgaggtacttggtcgttgattcacactctatttataatgttgttattgg |
6330064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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