View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_5 (Length: 520)
Name: NF3289_low_5
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 62 - 512
Target Start/End: Complemental strand, 46232264 - 46231814
Alignment:
| Q |
62 |
atggttgtatataattttgaaaaataggagcatcgttcaatattttcaaaataagaaagataagatctaagaacaattagaatgaatgttttatacttta |
161 |
Q |
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| T |
46232264 |
atggttgtatataattttgaaaaataggagcatcgttcaatattttcaaaataagaaagataagatctaagaacaattagaatgaatgttttatacttta |
46232165 |
T |
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| Q |
162 |
aaatagttgaactatttgctttcacaacatccaaaaaagagcagcaactgtggataaaatcaccaatatcaacttccataagagggtcaatccattctgt |
261 |
Q |
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| T |
46232164 |
aaatagttgaactatttgctttcacaacatccaaaaaagagcagcaactgtggataaaatcaccaatatcaacttccataagagggtcaatccattctgt |
46232065 |
T |
|
| Q |
262 |
tttagcaggaacagagtgcccccttgatcatcacgaatacaaacaccaatatccaccttgttatgatcatgagagaacgaggcctcaccattggatatgt |
361 |
Q |
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| T |
46232064 |
tttagcaggaacagagtgcccccttgatcatcacgaatacaaacaccaatatccaccttgttatgatcatgagagaacgaggcctcaccattggatatgt |
46231965 |
T |
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| Q |
362 |
atcttcctaattgaggttttgaccaaagtgatggtttcaaatgctgttgtacagtggcagaaattctgaatttttgggcattttcccagccagtcacata |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46231964 |
atcttcctaattgaggttttgaccaaagtgatggtttcaaatgctgttgtacagtggcagaaattctgaattcttgggcattttcccagccagtcacata |
46231865 |
T |
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| Q |
462 |
ccactgctctagattctgagtcgttgttccaaatgttattattcctttgct |
512 |
Q |
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| T |
46231864 |
ccactgctctagattctgagtcgttgttccaaatgttattattcctttgct |
46231814 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 37804608 - 37804555
Alignment:
| Q |
221 |
tcaccaatatcaacttccataagagggtcaatccattctgttttagcaggaaca |
274 |
Q |
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| T |
37804608 |
tcaccaatatcaactttcataagaggttcaatccattctgtttcagcaagaaca |
37804555 |
T |
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