View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_7 (Length: 454)
Name: NF3289_low_7
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 178 - 443
Target Start/End: Complemental strand, 115215 - 114948
Alignment:
| Q |
178 |
agacccgacttatttgagcagtttacttctatccactgtcaatttgtgaaactcaatttgaagtcggaaaacatagtt--gtattgactcatccttcaga |
275 |
Q |
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| T |
115215 |
agacccgacttatctgagcagtttactcctacctgctgtcattttgtgaaactcaatttaaagtcggaaaacatagttctgtattgactcatccttcaaa |
115116 |
T |
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| Q |
276 |
attggcatcaagagaaatcaaatttaaatcttnnnnnnnncatacttcaagttctcaagttaacgacacaaaaattaattcagtaaatataaacatggtc |
375 |
Q |
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| T |
115115 |
attggcatcaagagaaatcaaatctaaatcttaaaaaaaacatacttcaaggtctcaagctaacgacacaaaaattaattcagtaaatataaaaatggtc |
115016 |
T |
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| Q |
376 |
aattgctttatgggatatacatgagtataacttagcttttcaccgttacattgtctttatcgtttcat |
443 |
Q |
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| T |
115015 |
aattgctttatgggatatacatgagtataacttagcttttcactgttacattgtctttatcgtttcat |
114948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 115394 - 115258
Alignment:
| Q |
18 |
gaaactttaaaatatatatccaatcaagactatgaccatagtggagatagagacagagag--gtagtcaccaatcaagatagagaataaaacattagact |
115 |
Q |
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| T |
115394 |
gaaactttaaaatatatatccaatcaagactatgaccatagtggagatagagacagagagaggtagtcaccaatcaagatagagaataaaacattagact |
115295 |
T |
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| Q |
116 |
atagttatgtggcaacaggtgttaagattgaaaacga |
152 |
Q |
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| T |
115294 |
atagttatgtggcaacaggtgttaagattgaaaacga |
115258 |
T |
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