View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3289_low_8 (Length: 378)

Name: NF3289_low_8
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3289_low_8
NF3289_low_8
[»] chr5 (1 HSPs)
chr5 (7-359)||(41628040-41628395)
[»] chr2 (12 HSPs)
chr2 (20-91)||(30394190-30394261)
chr2 (20-80)||(30475355-30475415)
chr2 (20-81)||(23767782-23767843)
chr2 (20-81)||(23784236-23784297)
chr2 (20-81)||(23796951-23797012)
chr2 (20-81)||(30384061-30384122)
chr2 (20-80)||(30482958-30483018)
chr2 (20-80)||(30436484-30436544)
chr2 (20-80)||(30468226-30468286)
chr2 (20-62)||(30424233-30424275)
chr2 (20-62)||(30430266-30430308)
chr2 (20-79)||(8380056-8380115)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 41628395 - 41628040
Alignment:
Q  7 tcgaagaatattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagttcaaatgaatttttac 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628395 tcgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagttcaaatgaatttttac 41628296  T
Q  107 attcctctatggaggtaattaagactattctttatatcat---atatagtgtttaactattgaagtctattcattttttatgtctctaatatttgtaatt 203  Q
    ||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41628295 attcctctatggaggtaattaagactaatctttatatcatcatatatagtgtttaactattaaagtctattcattttttatgtctctaatatttgtaatt 41628196  T
Q  204 aatcactaggaggccagttacacgaatgacatgtttatttgcaggtttgtacctactatggtcaataggaggattaatgaaattgggaaagatataaaat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628195 aatcactaggaggccagttacacgaatgacatgtttatttgcaggtttgtacctactatggtcaataggaggattaatgaaattgggaaagatataaaat 41628096  T
Q  304 cttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628095 cttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaa 41628040  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 30394190 - 30394261
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagtt 91  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||| ||||    
T  30394190 ggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttataacaacagtt 30394261  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 30475355 - 30475415
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 80  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  30475355 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaatcgagcaagctgaactta 30475415  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 23767782 - 23767843
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 81  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23767782 ggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23767843  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 23784297 - 23784236
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 81  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23784297 ggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23784236  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 23796951 - 23797012
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 81  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23796951 ggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23797012  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 30384061 - 30384122
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 81  Q
    |||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  30384061 ggaagtagctatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttat 30384122  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 30482958 - 30483018
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 80  Q
    |||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  30482958 ggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 30483018  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 30436484 - 30436544
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 80  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  30436484 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaactta 30436544  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 30468226 - 30468286
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 80  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  30468226 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaactta 30468286  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30424233 - 30424275
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaa 62  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  30424233 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30424275  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30430266 - 30430308
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaa 62  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  30430266 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30430308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 8380115 - 8380056
Alignment:
Q  20 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactt 79  Q
    ||||||||||| |||||||||| |||||||||| | |||||||  ||||||| |||||||    
T  8380115 ggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 8380056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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