View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3289_low_9 (Length: 355)
Name: NF3289_low_9
Description: NF3289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3289_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 138 - 338
Target Start/End: Original strand, 26411499 - 26411700
Alignment:
| Q |
138 |
ttttgccaacgatagctctctatttttcttttatcatcgcacgctca-tcactgcttttgcaattctccattccacccgaaggtacttcagattttcttt |
236 |
Q |
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|||||||||| || |||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26411499 |
ttttgccaacaatcgctctctatttttcttttatcaccacacgctccctccctgcttttgcaattctccattccactcgaaggtactttagattttcttt |
26411598 |
T |
|
| Q |
237 |
ctcaataattgtcatgttttttatggttagtttgtagtttttcatataaagttcatacttcaaatttcttatgtttaattgaaacagtttactgtgtttt |
336 |
Q |
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|| ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
26411599 |
cttgataattgtcatgttttttacggttagcctgtagtttttcatataaagttcatgcttcaaaattcttatgtttaattgaaacagtttaatgtgtttt |
26411698 |
T |
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| Q |
337 |
ct |
338 |
Q |
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|| |
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| T |
26411699 |
ct |
26411700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 212 - 338
Target Start/End: Original strand, 11019197 - 11019324
Alignment:
| Q |
212 |
cccgaaggtacttcagattttctttctcaataattgtcatgtttttt-atggttagtttgtagtttttcatataaagttcatacttcaaatttcttatgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
11019197 |
cccgaaggtacttcagattttctttctcaataattgtcatgtttttttacggttagcttgtagtttttcatataaagttcatgcttcaaaattcgtatgt |
11019296 |
T |
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| Q |
311 |
ttaattgaaacagtttactgtgttttct |
338 |
Q |
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||||| ||||||||||| |||||||||| |
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| T |
11019297 |
ttaatcgaaacagtttaatgtgttttct |
11019324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 11018623 - 11018704
Alignment:
| Q |
138 |
ttttgccaacgatagctctctatttttcttttatcatcgcacgct-catcactgcttttgcaattctccattccacccgaag |
218 |
Q |
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|||||||||| || |||||||||||| ||||||||| ||||||| | || ||||||||||||||||||||||||| ||||| |
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| T |
11018623 |
ttttgccaacaatcactctctattttttttttatcattgcacgctacctccctgcttttgcaattctccattccacacgaag |
11018704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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