View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3290_high_1 (Length: 671)

Name: NF3290_high_1
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3290_high_1
NF3290_high_1
[»] chr3 (7 HSPs)
chr3 (19-634)||(29334524-29335128)
chr3 (522-577)||(48376838-48376893)
chr3 (522-577)||(45254234-45254289)
chr3 (520-574)||(54230100-54230154)
chr3 (520-557)||(7859493-7859530)
chr3 (520-577)||(52119379-52119436)
chr3 (520-576)||(35191818-35191874)
[»] chr6 (7 HSPs)
chr6 (520-561)||(9333981-9334022)
chr6 (521-554)||(9973244-9973277)
chr6 (522-587)||(17177949-17178014)
chr6 (525-574)||(22414454-22414503)
chr6 (520-577)||(28592688-28592745)
chr6 (520-557)||(35110077-35110114)
chr6 (521-569)||(6196533-6196581)
[»] chr7 (5 HSPs)
chr7 (522-574)||(1046562-1046614)
chr7 (520-575)||(38553823-38553878)
chr7 (520-577)||(22690037-22690094)
chr7 (522-574)||(10467119-10467171)
chr7 (520-556)||(45151401-45151437)
[»] chr4 (10 HSPs)
chr4 (520-560)||(1657031-1657071)
chr4 (520-558)||(24570232-24570270)
chr4 (522-560)||(45029608-45029646)
chr4 (520-577)||(14542761-14542818)
chr4 (521-574)||(36071150-36071203)
chr4 (520-577)||(49308823-49308880)
chr4 (521-554)||(51465363-51465396)
chr4 (521-558)||(54587922-54587959)
chr4 (522-554)||(21266885-21266917)
chr4 (521-565)||(28311491-28311535)
[»] chr2 (4 HSPs)
chr2 (520-560)||(2264817-2264857)
chr2 (521-577)||(4238762-4238818)
chr2 (519-577)||(11832954-11833012)
chr2 (520-577)||(15654870-15654927)
[»] chr8 (8 HSPs)
chr8 (522-585)||(8698589-8698652)
chr8 (522-556)||(13958835-13958869)
chr8 (520-558)||(43456687-43456725)
chr8 (520-577)||(9635054-9635111)
chr8 (520-557)||(10201285-10201322)
chr8 (520-577)||(24296875-24296932)
chr8 (520-577)||(30623296-30623353)
chr8 (524-560)||(19701349-19701385)
[»] chr5 (4 HSPs)
chr5 (525-560)||(3052201-3052236)
chr5 (521-560)||(23118053-23118092)
chr5 (588-633)||(13168176-13168219)
chr5 (521-557)||(42885855-42885891)
[»] chr1 (10 HSPs)
chr1 (520-575)||(10132445-10132500)
chr1 (521-560)||(42416823-42416862)
chr1 (520-586)||(9872106-9872172)
chr1 (520-554)||(34083363-34083397)
chr1 (522-560)||(34599922-34599960)
chr1 (520-577)||(21015965-21016022)
chr1 (541-577)||(27127227-27127263)
chr1 (522-558)||(34485899-34485935)
chr1 (520-556)||(35527942-35527978)
chr1 (520-559)||(36164682-36164722)
[»] scaffold0734 (1 HSPs)
scaffold0734 (520-577)||(4342-4399)


Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Complemental strand, 29335128 - 29334524
Alignment:
Q  19 tatcggtcatccgatattcttggaggacgatgagacagaactgatgtggcaaggtagtttccatcaggttactaagggaggtagtaatactcatcagagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29335128 tatcggtcatccgatattcttggaggacgatgagacagaactgatgtggcaaggtagtttccatcaggttactaagggaggtagtaatactcatcagagt 29335029  T
Q  119 tcaaatatgtgttttagtgaggtgaatgtgaaaccattggttgacattgagaattcagcacctgaattaacattgaaactttgaaagggttaatgctatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29335028 tcaaatatgtgttttagtgaggtgaatgtgaaaccattggttgacattgagaattcagcacctgaattaacattgaaactttgaaagggttaatgctatt 29334929  T
Q  219 attacaaatctatgctttgatatttcactctatttttcttgttctataagagctctaggaagacaaatttagagcatctatgtatgtctacnnnnnnnnn 318  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  29334928 attacaaatctatgctttgatattttactctatttttcttgttctataagagctctaggaagacaaatttagagcatctatgtatgtctac--tatatat 29334831  T
Q  319 nnnaatcatgtttgtaattactctacacaacttccaccatgtttttctgtatcatccatcatctgtttctattttgggttatattgacaaaccaactatt 418  Q
       ||||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  29334830 ataaatcatgtttgtaattactctacacaacttccaccatgtttttgtgtat----catcatctgtttctattttgggttatattgacaaaccaactatt 29334735  T
Q  419 taatacaattagttaagggagcaaatttctccgctcatatttctaaaaagctatctaaaagtccagggattacaaatataaatcnnnnnnnnnnnnnngt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |               ||    
T  29334734 taatacaattagttaagggagcaaatttctccgctcatatttctaaaaagctacctaaaagttcagggattacaaatataatt-----ttttttttttgt 29334640  T
Q  519 tggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagctgacgcgaacacaaatataaatttcttagacacactcacaaa 618  Q
    || ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  29334639 tgattccaacccgaacccttacatatattatgcattgtccttactaactgatctaagctcacgcgaacagaaacataaatttcttagacacactcacaaa 29334540  T
Q  619 atatttattctacctc 634  Q
    ||||||||||||||||    
T  29334539 atatttattctacctc 29334524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 577
Target Start/End: Complemental strand, 48376893 - 48376838
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||| ||||||||||||||||||||||| || | |||||| |||||||    
T  48376893 ttcgaaccccaaaccttacatatattatgcattatctttaccaactgagctaagct 48376838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 577
Target Start/End: Complemental strand, 45254289 - 45254234
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    ||||||| |||| |||||||||||||||||||| ||||| | |||||| |||||||    
T  45254289 ttcgaactccaaaccttacatatattatgcattgtccttaccaactgagctaagct 45254234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 574
Target Start/End: Original strand, 54230100 - 54230154
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaa 574  Q
    |||||||||||||| |||| ||||||||||||||| ||||| | |||||| ||||    
T  54230100 ggttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagctaa 54230154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Original strand, 7859493 - 7859530
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatc 557  Q
    |||||||||||| | |||||||||||||||||||||||    
T  7859493 ggttcgaaccccgaaccttacatatattatgcattatc 7859530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Complemental strand, 52119436 - 52119379
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||| | |||| ||||||||||||||| ||||| | |||||| |||||||    
T  52119436 ggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaagct 52119379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 576
Target Start/End: Original strand, 35191818 - 35191874
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagc 576  Q
    |||||||||||||  |||| ||||||||||||||| ||||| | |||||| ||||||    
T  35191818 ggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagc 35191874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 561
Target Start/End: Original strand, 9333981 - 9334022
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttg 561  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  9333981 ggttcgaaccccaaaccttacatatattatgcattgtccttg 9334022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 554
Target Start/End: Complemental strand, 9973277 - 9973244
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcatt 554  Q
    ||||||||||||| ||||||||||||||||||||    
T  9973277 gttcgaaccccaaaccttacatatattatgcatt 9973244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 587
Target Start/End: Original strand, 17177949 - 17178014
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagctgacgcgaaca 587  Q
    |||||||| ||  |||||||||||||||||||| ||||| |||| ||| ||||||| ||| |||||    
T  17177949 ttcgaacctcataccttacatatattatgcattttccttactaattgagctaagctcacgggaaca 17178014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 574
Target Start/End: Original strand, 22414454 - 22414503
Alignment:
Q  525 gaaccccaacccttacatatattatgcattatccttgctaactgatctaa 574  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||| ||||    
T  22414454 gaaccccagacctttcatatattatgcattatccttactaactgagctaa 22414503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 28592688 - 28592745
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||  |||||||||||||||||||| || |||| || ||| |||||||    
T  28592688 ggttcgaaccccagaccttacatatattatgcattgtctttgccaattgaactaagct 28592745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 35110114 - 35110077
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatc 557  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  35110114 ggttcgaacctcaaaccttacatatattatgcattatc 35110077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 6196533 - 6196581
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatccttgctaactga 569  Q
    ||||||||||| |||| ||||||||||||||||| ||||| | ||||||    
T  6196533 gttcgaaccccgacccctacatatattatgcattgtccttaccaactga 6196581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 574
Target Start/End: Complemental strand, 1046614 - 1046562
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaa 574  Q
    |||||||||||  ||||||||||||||||||||||| || |||||||| ||||    
T  1046614 ttcgaaccccagaccttacatatattatgcattatctttactaactgacctaa 1046562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 575
Target Start/End: Complemental strand, 38553878 - 38553823
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaag 575  Q
    |||||||||||||| |||||||||||||||||||| | ||| | |||||| |||||    
T  38553878 ggttcgaaccccaaaccttacatatattatgcattgttcttaccaactgagctaag 38553823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 22690037 - 22690094
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||| |||| ||||||||||||||||| |||   |||||| |||||||    
T  22690037 ggttcgaaccccaaaccttgcatatattatgcattattcttagcaactgagctaagct 22690094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 10467119 - 10467171
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaa 574  Q
    |||||||||||| |||| || |||||||||||||||| | | |||||||||||    
T  10467119 ttcgaaccccaaaccttgcaaatattatgcattatccctaccaactgatctaa 10467171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 45151437 - 45151401
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattat 556  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  45151437 ggtttgaaccccaaaccttacatatattatgcattat 45151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 560
Target Start/End: Original strand, 1657031 - 1657071
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatcctt 560  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  1657031 ggttcgaaccccaaaccttacatatattatgcattgtcctt 1657071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 24570270 - 24570232
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatcc 558  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  24570270 ggttcgaaccccaacccctacatatattgtgcattatcc 24570232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 560
Target Start/End: Original strand, 45029608 - 45029646
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatcctt 560  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  45029608 ttcgaaccccaaaccttacatatattatgcattgtcctt 45029646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 14542761 - 14542818
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||  |||| ||||||||||||||| ||||||| |||| | |||||||    
T  14542761 ggttcgaaccccagaccttgcatatattatgcattgtccttgccaactaagctaagct 14542818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Complemental strand, 36071203 - 36071150
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaa 574  Q
    ||||||||||| | |||||||||||||||||||| ||||| | |||||| ||||    
T  36071203 gttcgaaccccgaaccttacatatattatgcattgtccttaccaactgacctaa 36071150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Complemental strand, 49308880 - 49308823
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||  |||| ||||||||||||||| ||||||  |||||| |||||||    
T  49308880 ggttcgaaccccagaccttgcatatattatgcattgtccttgtcaactgagctaagct 49308823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 554
Target Start/End: Complemental strand, 51465396 - 51465363
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcatt 554  Q
    ||||||||||| ||||||||||||||||||||||    
T  51465396 gttcgaaccccgacccttacatatattatgcatt 51465363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 558
Target Start/End: Complemental strand, 54587959 - 54587922
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatcc 558  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  54587959 gttcgaatcccaaaccttacatatattatgcattatcc 54587922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 554
Target Start/End: Original strand, 21266885 - 21266917
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcatt 554  Q
    |||||||||||| ||||||||||||||||||||    
T  21266885 ttcgaaccccaaaccttacatatattatgcatt 21266917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 28311535 - 28311491
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatccttgctaa 565  Q
    ||||||||| ||  |||||||||||||||||||||||||| ||||    
T  28311535 gttcgaacctcacaccttacatatattatgcattatccttactaa 28311491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 560
Target Start/End: Complemental strand, 2264857 - 2264817
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatcctt 560  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  2264857 ggttcgaaccccaaaccttacatatattatgcattttcctt 2264817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 577
Target Start/End: Complemental strand, 4238818 - 4238762
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    ||||||||||| | |||||||||||||||||||| ||| | |||||||| |||||||    
T  4238818 gttcgaaccccgaaccttacatatattatgcattgtccatactaactgagctaagct 4238762  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 577
Target Start/End: Complemental strand, 11833012 - 11832954
Alignment:
Q  519 tggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||| ||| |||||||| |||| | ||||||||| |||||| |||||||    
T  11833012 tggttcgaaccccagcccctacatataatatgaaatatccttgccaactgaactaagct 11832954  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 15654870 - 15654927
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||  |||| ||||| ||||||||||||||| | |||||| |||||||    
T  15654870 ggttcgaaccccagaccttgcatattttatgcattatccttaccaactgagctaagct 15654927  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 585
Target Start/End: Original strand, 8698589 - 8698652
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagctgacgcgaa 585  Q
    ||||||||||||||| |||||||| |||||| ||||| | | |||||| ||||||| |||||||    
T  8698589 ttcgaaccccaacccctacatataatatgcaatatccctaccaactgagctaagctcacgcgaa 8698652  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 556
Target Start/End: Complemental strand, 13958869 - 13958835
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattat 556  Q
    |||||||||||| ||||||||||||||||||||||    
T  13958869 ttcgaaccccaaaccttacatatattatgcattat 13958835  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 558
Target Start/End: Original strand, 43456687 - 43456725
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatcc 558  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  43456687 ggttcgaaccccgacccttacatatattgtgcattatcc 43456725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 9635054 - 9635111
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||| | |||| ||| ||||||||||||||||| | |||||| |||||||    
T  9635054 ggttcgaaccccgaaccttgcatgtattatgcattatccttacaaactgagctaagct 9635111  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 10201322 - 10201285
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatc 557  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  10201322 ggttcgaaccccgacccctacatatattatgcattatc 10201285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 24296875 - 24296932
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    ||||||||||||||||| | |||||| |||||| ||||| | |||||||| |||||||    
T  24296875 ggttcgaaccccaacccctgcatataatatgcaatatccctactaactgagctaagct 24296932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Complemental strand, 30623353 - 30623296
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||  |||| ||||||||||||||| ||||| | |||||| |||||||    
T  30623353 ggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagct 30623296  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 560
Target Start/End: Original strand, 19701349 - 19701385
Alignment:
Q  524 cgaaccccaacccttacatatattatgcattatcctt 560  Q
    |||||||||  ||||||||||||||||||||||||||    
T  19701349 cgaaccccagaccttacatatattatgcattatcctt 19701385  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 560
Target Start/End: Complemental strand, 3052236 - 3052201
Alignment:
Q  525 gaaccccaacccttacatatattatgcattatcctt 560  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3052236 gaaccccaaaccttacatatattatgcattatcctt 3052201  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 560
Target Start/End: Original strand, 23118053 - 23118092
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatcctt 560  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  23118053 gttcgaaccccaaaccttacatatattatgcattgtcctt 23118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 633
Target Start/End: Original strand, 13168176 - 13168219
Alignment:
Q  588 caaatataaatttcttagacacactcacaaaatatttattctacct 633  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||    
T  13168176 caaatataaatttctca--cacactcacaaaatatttattctacct 13168219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 557
Target Start/End: Complemental strand, 42885891 - 42885855
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatc 557  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  42885891 gttcgaaccccaacccttacatataatatgcaatatc 42885855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 575
Target Start/End: Original strand, 10132445 - 10132500
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaag 575  Q
    |||||||||||||  |||| ||||||||||||||| ||||| | ||||||||||||    
T  10132445 ggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgatctaag 10132500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 560
Target Start/End: Complemental strand, 42416862 - 42416823
Alignment:
Q  521 gttcgaaccccaacccttacatatattatgcattatcctt 560  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  42416862 gttcgaaccccaaaccttgcatatattatgcattatcctt 42416823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 586
Target Start/End: Original strand, 9872106 - 9872172
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagctgacgcgaac 586  Q
    |||||||||| ||| |||| ||||||||||||||||||||| | |||||| ||| ||| ||| ||||    
T  9872106 ggttcgaaccgcaaaccttgcatatattatgcattatccttaccaactgagctatgctcacgtgaac 9872172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 554
Target Start/End: Complemental strand, 34083397 - 34083363
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcatt 554  Q
    |||||||||||||| ||||||||||||||||||||    
T  34083397 ggttcgaaccccaaaccttacatatattatgcatt 34083363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 560
Target Start/End: Original strand, 34599922 - 34599960
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatcctt 560  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  34599922 ttcgaaccccaaaccttatatatattatgcattatcctt 34599960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Complemental strand, 21016022 - 21015965
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||| | |||||||||||||||||||| | ||| | |||||| |||||||    
T  21016022 ggttcgaaccccgaaccttacatatattatgcattgttcttaccaactgagctaagct 21015965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 577
Target Start/End: Complemental strand, 27127263 - 27127227
Alignment:
Q  541 atatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||||||||| |||||||| |||||||    
T  27127263 atatattatgcattatccttactaactgagctaagct 27127227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 558
Target Start/End: Complemental strand, 34485935 - 34485899
Alignment:
Q  522 ttcgaaccccaacccttacatatattatgcattatcc 558  Q
    |||||||||||  ||||||||||||||||||||||||    
T  34485935 ttcgaaccccagaccttacatatattatgcattatcc 34485899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 35527978 - 35527942
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattat 556  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  35527978 ggttcgaaccccaaaccttatatatattatgcattat 35527942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 559
Target Start/End: Complemental strand, 36164722 - 36164682
Alignment:
Q  520 ggttcgaaccccaacccttacatat-attatgcattatcct 559  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  36164722 ggttcgaaccccaacccttacatataataatgcattatcct 36164682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 4342 - 4399
Alignment:
Q  520 ggttcgaaccccaacccttacatatattatgcattatccttgctaactgatctaagct 577  Q
    |||||||||||||| | || ||||||||||||||||||||| | || | |||||||||    
T  4342 ggttcgaaccccaaacattccatatattatgcattatccttaccaagtaatctaagct 4399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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