View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_high_11 (Length: 378)
Name: NF3290_high_11
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 8465543 - 8465175
Alignment:
| Q |
1 |
cattcactcactctctgtgttcattctctctcttttttcttattccagacagacttagctagttgaagaaacaagctcaggtaactctctctttaatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8465543 |
cattcactcactctctgtgttcattctctctcttttttcttattccagacagacttagctagttgaagaaacaagctcaggtaactctctctttaatatt |
8465444 |
T |
|
| Q |
101 |
ttgatttcattctctcctattttactgtaggtttaacatccagatcaaagacaactcataatagtctcttaccttaataatttgataccccaagatttaa |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
8465443 |
ttgatttcattctctcctattttgctgtaggtttaacatccagatcaaagacaactcataatagtatcctaccttaataatttgataccccaagatttaa |
8465344 |
T |
|
| Q |
201 |
gttaaacttctaagattttgtttcattttacttcttaatttcactcg--nnnnnnnngtaatattatggaactaaaattatcttttacccttaaatttaa |
298 |
Q |
| |
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||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
8465343 |
gttaaacttctaagacttcgtttcattttagttcttaatttcactcgttttttttttgtaatattatggaactaaaattatcttttaccctta-----aa |
8465249 |
T |
|
| Q |
299 |
tttaatatgttaggttct--nnnnnnntaactttttatatttggcccatatgtacaatttttgctacctttgct |
370 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8465248 |
tttaatatgttaggttctaaaaaaaaaaaactttttatatttggcccgtatgtacaatttttgctacctttgct |
8465175 |
T |
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