View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3290_high_12 (Length: 358)

Name: NF3290_high_12
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3290_high_12
NF3290_high_12
[»] chr7 (14 HSPs)
chr7 (1-340)||(24237821-24238158)
chr7 (217-340)||(24232626-24232749)
chr7 (241-341)||(21194275-21194375)
chr7 (241-341)||(24132561-24132661)
chr7 (241-341)||(24122130-24122230)
chr7 (277-340)||(21199524-21199587)
chr7 (247-340)||(24161288-24161381)
chr7 (239-341)||(24154374-24154476)
chr7 (272-341)||(3494929-3494998)
chr7 (282-341)||(24151219-24151278)
chr7 (267-340)||(24146229-24146302)
chr7 (241-340)||(24284009-24284108)
chr7 (267-341)||(24138494-24138568)
chr7 (267-340)||(23342869-23342942)
[»] chr2 (1 HSPs)
chr2 (241-340)||(10988808-10988907)
[»] chr1 (2 HSPs)
chr1 (217-340)||(15380145-15380268)
chr1 (241-340)||(3151054-3151152)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 24237821 - 24238158
Alignment:
Q  1 tatccgatgtgattaataatttcatttcacattccaaagttgcacacgctaaagaaataaagagtcaatttttaaaaccaaacgttttataagcaagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24237821 tatccgatgtgattaataatttcatttcacattccaaagttgcacacgctaaagaaataaatagtcaatttttaaaaccaaacgttttataagcaagttt 24237920  T
Q  101 cagcatatttgtattgccattgnnnnnnnnnnnca---caaagttgcattaatattacagtacttctctaggtgaattgccaatatttgttacaatggca 197  Q
    ||||||| ||||||||||||||           ||   ||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||    
T  24237921 cagcatagttgtattgccattgaaaaaaaaaaacaaaacaaagttgcattaatattac-----ttctctaggtgaattgccaatatttgttacaatgaca 24238015  T
Q  198 gataattatactcgagccattgaacaagttaaccatgttcggctgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaagg 297  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24238016 gataattatacttgacccattgaacaagttaaccatgttcggctgagagttatggtggacggaaaaaggaacaaagttgtgtatgctgaggcaggcaagg 24238115  T
Q  298 attttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24238116 attttgtcgatgctctcttcagtttcttaacattgcctttagg 24238158  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 340
Target Start/End: Complemental strand, 24232749 - 24232626
Alignment:
Q  217 ttgaacaagttaaccatgttcggctgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctctt 316  Q
    ||||||||||| |  ||||||| |||||| || ||||||||  ||||| |||||||||||||||||||||||| || |||||||| || |||||||||||    
T  24232749 ttgaacaagttgataatgttcgcctgagaattttggtggacaaagaaaagaacaaagttgtgtatgctgaggctgggaaggatttcgttgatgctctctt 24232650  T
Q  317 cagtttcttaacattgcctttagg 340  Q
    ||| ||||||||||||||||||||    
T  24232649 cagcttcttaacattgcctttagg 24232626  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 21194275 - 21194375
Alignment:
Q  241 tgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    |||| ||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||| | || | ||| ||||| ||||||||||||||||||||    
T  21194275 tgagggttatggtggacaaagaaaggaacaaagttttgtatgctgaggcagggaaggattttattgaagttctattcagcttcttaacattgcctttagg 21194374  T
Q  341 t 341  Q
    |    
T  21194375 t 21194375  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 24132661 - 24132561
Alignment:
Q  241 tgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    |||||||| ||||||||  | ||| || |||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  24132661 tgagagttttggtggacaaacaaaagagcaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaacattgcctttagg 24132562  T
Q  341 t 341  Q
    |    
T  24132561 t 24132561  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 24122230 - 24122130
Alignment:
Q  241 tgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    ||||||| |||||||||  |||||  |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||| || || |||||    
T  24122230 tgagagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccattagg 24122131  T
Q  341 t 341  Q
    |    
T  24122130 t 24122130  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 21199524 - 21199587
Alignment:
Q  277 tgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    |||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||    
T  21199524 tgtatgctgaggcaggaaaggattttgttgatgctctcttcggcttcttaacattgcctttagg 21199587  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 24161381 - 24161288
Alignment:
Q  247 ttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    |||||||||||  ||||||||| |||||| | ||||||||||| || |||||||||||||||| ||| ||||| ||||| ||||| ||| ||||    
T  24161381 ttatggtggacaaagaaaggaagaaagttctatatgctgaggctggaaaggattttgtcgatgttcttttcagcttcttgacattacctctagg 24161288  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 24154476 - 24154374
Alignment:
Q  239 gctgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgccttta 338  Q
    |||||||||| ||||||||  ||  ||||| |||||||| |||||||| ||||  |||||||| || |||| ||| || || ||||||||||||||||||    
T  24154476 gctgagagttttggtggacaaagcgaggaaaaaagttgtttatgctgaagcagagaaggatttcgttgatgttctgttaagcttcttaacattgccttta 24154377  T
Q  339 ggt 341  Q
    |||    
T  24154376 ggt 24154374  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 3494998 - 3494929
Alignment:
Q  272 agttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttaggt 341  Q
    |||| |||||||||| || || |||||||| ||||||| |||||| |||||||||||||||||| |||||    
T  3494998 agttctgtatgctgaagccggtaaggatttcgtcgatgttctctttagtttcttaacattgcctctaggt 3494929  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 24151278 - 24151219
Alignment:
Q  282 gctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttaggt 341  Q
    |||||||| || ||||||||||| ||||| |||||||| ||||||||||| |||||||||    
T  24151278 gctgaggctgggaaggattttgttgatgcactcttcagcttcttaacatttcctttaggt 24151219  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 24146302 - 24146229
Alignment:
Q  267 aacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    ||||||||| ||| ||| |||||||| ||||||||||| |||| ||| || || |||||| |||||||||||||    
T  24146302 aacaaagttctgtttgcagaggcaggaaaggattttgttgatgttcttttgagcttcttatcattgcctttagg 24146229  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 24284009 - 24284108
Alignment:
Q  241 tgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    ||||||||||||||||   |||||| ||||||||| | ||| |||| ||||  ||||||||||| ||||  |||||||| ||||| || ||||| |||||    
T  24284009 tgagagttatggtggataaagaaagtaacaaagttctatatcctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagg 24284108  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 24138568 - 24138494
Alignment:
Q  267 aacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttaggt 341  Q
    ||||||||| ||| | |||||||||  ||||||||||| |||| ||| || |||||||||||||| || ||||||    
T  24138568 aacaaagttctgtttactgaggcagataaggattttgttgatgttcttttgagtttcttaacattacccttaggt 24138494  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 23342942 - 23342869
Alignment:
Q  267 aacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    ||||||||  ||| |||||| ||||| ||||| ||||| |||| ||| || || ||||||||||||||||||||    
T  23342942 aacaaagtcttgtttgctgaagcaggaaaggactttgtggatgttctgtttagcttcttaacattgcctttagg 23342869  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 10988808 - 10988907
Alignment:
Q  241 tgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    ||||||||| ||||||   |||||| ||||||||| |||||||||||||||  |||||||| || |||| ||||||||| ||||||||||||||||||||    
T  10988808 tgagagttaaggtggataaagaaagtaacaaagttctgtatgctgaggcagtgaaggatttcgttgatgttctcttcagcttcttaacattgcctttagg 10988907  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 340
Target Start/End: Original strand, 15380145 - 15380268
Alignment:
Q  217 ttgaacaagttaaccatgttcggctgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctctt 316  Q
    ||||||||||| || | ||| |  ||||| ||||||||||  ||||||||||||||||| | ||||  |||||||| ||||||||||| ||| |||| ||    
T  15380145 ttgaacaagttgacgaagttagcttgagatttatggtggatagagaaaggaacaaagttctatatgtagaggcagggaaggattttgttgatactctttt 15380244  T
Q  317 cagtttcttaacattgcctttagg 340  Q
    ||| ||||||| ||| ||||||||    
T  15380245 cagcttcttaatatttcctttagg 15380268  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 3151054 - 3151152
Alignment:
Q  241 tgagagttatggtggacggagaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 340  Q
    ||||| |||||||||||  |||||||||||| ||| | ||||||||||| || |||||||| ||||||| ||| || ||||| |||||||| ||| ||||    
T  3151054 tgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagg 3151152  T

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