View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_high_15 (Length: 302)
Name: NF3290_high_15
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 15115595 - 15115880
Alignment:
| Q |
1 |
ccaatcaagcctattggtatgtcctttggcggatttttagtttcttcagccatggttgcaagactgtcaaaccctccatatgcaaaatatagaattgcag |
100 |
Q |
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| T |
15115595 |
ccaatcaagcctattggtatgtcctttggcggatttttagtttcttcagccatggttgcaagactgtcaaaccctccatatgcaaaatatagaattgcag |
15115694 |
T |
|
| Q |
101 |
atgcttgaaatacacctttaactccataaggtaaaaaaggtgtcaagtttgatgtatttgcatgagaaaaccctgcaacgattacgaatatgattacacc |
200 |
Q |
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| T |
15115695 |
atgcttgaaatacacctttaactccataaggtaaaaaaggtgtcaagtttgatgtatttgcatgagaaaatcctgcaacgattacgaatatgattacacc |
15115794 |
T |
|
| Q |
201 |
tatgttgactgccgatgcaatccaattgagaagcgaagtttttcttgtgctgatcattgcaatcattgcggaaattaccagaacac |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15115795 |
tatgttgactgccgatgcaatccaattgagaagcgaagtttttcttgtgctgatcattgcaatcattgcggaaattaccagaacac |
15115880 |
T |
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