View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3290_high_17 (Length: 278)

Name: NF3290_high_17
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3290_high_17
NF3290_high_17
[»] chr4 (4 HSPs)
chr4 (111-238)||(3124838-3124967)
chr4 (108-232)||(54856667-54856785)
chr4 (140-168)||(1425627-1425655)
chr4 (108-144)||(12049553-12049589)
[»] chr7 (6 HSPs)
chr7 (108-191)||(37179920-37180003)
chr7 (128-194)||(24237537-24237603)
chr7 (108-144)||(24237481-24237517)
chr7 (127-162)||(48825840-48825875)
chr7 (217-259)||(24237618-24237660)
chr7 (108-144)||(48825899-48825935)
[»] chr2 (4 HSPs)
chr2 (110-191)||(12733126-12733207)
chr2 (108-185)||(35818963-35819040)
chr2 (136-195)||(17316454-17316513)
chr2 (108-145)||(7155007-7155044)
[»] chr3 (4 HSPs)
chr3 (108-164)||(41653732-41653787)
chr3 (108-162)||(41653879-41653932)
chr3 (108-145)||(3987278-3987315)
chr3 (131-195)||(3987192-3987256)
[»] chr5 (2 HSPs)
chr5 (136-192)||(32765940-32765996)
chr5 (136-235)||(1374342-1374448)
[»] chr1 (3 HSPs)
chr1 (200-237)||(25711264-25711301)
chr1 (108-164)||(37491265-37491321)
chr1 (108-144)||(8342202-8342238)
[»] scaffold0172 (1 HSPs)
scaffold0172 (110-195)||(31072-31157)
[»] scaffold0380 (1 HSPs)
scaffold0380 (127-195)||(11061-11129)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 3124967 - 3124838
Alignment:
Q  111 ctaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgctt--cttctatagtgc 208  Q
    |||||||||||||| |||||||||||||||||| | ||||| | ||||||| || |||  | |||||||| ||||| |||||||    |  |||||||||    
T  3124967 ctaaaatcaaatagtggctgaagcggccgctatttgattccacgccgctacaacgattagcgtagcggttcgtcgctgctacgcgcggcagctatagtgc 3124868  T
Q  209 cgctatcggccgctgttgactactatggtt 238  Q
    ||||||||||||||||||||||||||||||    
T  3124867 cgctatcggccgctgttgactactatggtt 3124838  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 54856785 - 54856667
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgcttcttctatagtg 207  Q
    ||||||||||||||||| || ||||||||||||| |||||||| | || |||||||| |||  | ||||||||  |||| |||||       |||||| |    
T  54856785 caactaaaatcaaatagcggttgaagcggccgctgtctcattctggactgctacgacgattagcgtagcggttcatcgctgctac------actatagcg 54856692  T
Q  208 ccgctatcggccgctgttgactact 232  Q
    ||||||||||| ||| |||||||||    
T  54856691 ccgctatcggctgcttttgactact 54856667  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 1425627 - 1425655
Alignment:
Q  140 ctatctcattccgcaccgctacgacaatt 168  Q
    |||||||||||||||||||||||||||||    
T  1425627 ctatctcattccgcaccgctacgacaatt 1425655  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 12049589 - 12049553
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatc 144  Q
    ||||||||||||||||| | |||||||||||||||||    
T  12049589 caactaaaatcaaatagcgtctgaagcggccgctatc 12049553  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 37180003 - 37179920
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggcta 191  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||||| ||||||  | |||||||||||||| ||||    
T  37180003 caactaaaatcaaatagcagctgaagcggccgctatctcataccgcaccgctacaacaattagcatagcggtttgtcgccgcta 37179920  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 24237537 - 24237603
Alignment:
Q  128 ctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgc 194  Q
    |||||||||||||||||||||||||||||||||||| |||| || || ||||| ||||| |||||||    
T  24237537 ctgaagcggccgctatctcattccgcaccgctacgaaaattaacgtaacggttcgtcgccgctacgc 24237603  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 24237481 - 24237517
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatc 144  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24237481 caactaaaatcaaataggggctgaagcggccgttatc 24237517  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 48825875 - 48825840
Alignment:
Q  127 gctgaagcggccgctatctcattccgcaccgctacg 162  Q
    |||||||||||||||||||||||||| |||||||||    
T  48825875 gctgaagcggccgctatctcattccgtaccgctacg 48825840  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 24237618 - 24237660
Alignment:
Q  217 gccgctgttgactactatggttgaaatacttctaatttttaaa 259  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||    
T  24237618 gccgctgttgactaccatggttgaaaaactactaatttttaaa 24237660  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 48825935 - 48825899
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatc 144  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  48825935 caactaaaatcaaatagcggctgaagcggctgctatc 48825899  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 12733126 - 12733207
Alignment:
Q  110 actaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggcta 191  Q
    ||||||||||||||| |||||||||||| ||||| | |||||||||||||||||| |||  | |||||||||||||| ||||    
T  12733126 actaaaatcaaatagtggctgaagcggctgctatttgattccgcaccgctacgacgattaccgtagcggtttgtcgctgcta 12733207  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 35819040 - 35818963
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcg 185  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || | ||||||||||||  | |||||||| ||||    
T  35819040 caactaaaatcaaatagcggctgaagcggccgctatctcattctgcgctgctacgacaattagcgtagcggttcgtcg 35818963  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 17316454 - 17316513
Alignment:
Q  136 gccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgct 195  Q
    |||||||||||||||||||||||||||||||||  | |||||||| ||| | ||||||||    
T  17316454 gccgctatctcattccgcaccgctacgacaattagcgtagcggttcgtcaccgctacgct 17316513  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 7155007 - 7155044
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatct 145  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  7155007 caactaaaatcaaatagcggccgaagcggccgctatct 7155044  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 41653787 - 41653732
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgac 164  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  41653787 caactaaaatcaaataggg-ctgaagcggccgctatctcattccacactgctacgac 41653732  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 41653932 - 41653879
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacg 162  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||| ||||||    
T  41653932 caactaaaatcaaatacgg-ctgaagcggccgctatctcattccacactgctacg 41653879  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 3987315 - 3987278
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatct 145  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  3987315 caactaaaatcaaatagcggctgaagcggccactatct 3987278  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 3987256 - 3987192
Alignment:
Q  131 aagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgct 195  Q
    ||||||||||||| | ||| ||||||||||||||||||  | ||| |||| ||||| ||||||||    
T  3987256 aagcggccgctattttatttcgcaccgctacgacaattagcgtagaggttcgtcgccgctacgct 3987192  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 32765996 - 32765940
Alignment:
Q  136 gccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctac 192  Q
    |||||||||||||||||||||||||||||||||  | ||||||||| |||| |||||    
T  32765996 gccgctatctcattccgcaccgctacgacaattagcgtagcggtttatcgccgctac 32765940  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 1374448 - 1374342
Alignment:
Q  136 gccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgcttctt-------ctatagtgccgctatcggccgctgttgac 228  Q
    ||||||||||||| ||||||| ||| |||||||    |||||||||||||| |||||||| |         ||||||||||||||||||||||| |||||    
T  1374448 gccgctatctcataccgcaccactatgacaattagtgtagcggtttgtcgccgctacgctacgcgcggccgctatagtgccgctatcggccgctattgac 1374349  T
Q  229 tactatg 235  Q
    |||||||    
T  1374348 tactatg 1374342  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 25711264 - 25711301
Alignment:
Q  200 ctatagtgccgctatcggccgctgttgactactatggt 237  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  25711264 ctatagtgccgctatcggccgctattgactactatggt 25711301  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 37491265 - 37491321
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgac 164  Q
    ||||||||||||||||  ||||||||| | |||||||| |||| |||||||||||||    
T  37491265 caactaaaatcaaataacggctgaagcagtcgctatctgattctgcaccgctacgac 37491321  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 8342202 - 8342238
Alignment:
Q  108 caactaaaatcaaataggggctgaagcggccgctatc 144  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  8342202 caactaaaatcaaatagcggctgaagtggccgctatc 8342238  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 31072 - 31157
Alignment:
Q  110 actaaaatcaaataggggctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgct 195  Q
    ||||||||||||||  |||||||| ||||||||| | |||  || |||||||||| |||  | |||||||| ||||| ||||||||    
T  31072 actaaaatcaaataacggctgaagtggccgctatttgattatgcgccgctacgacgattaccgtagcggttcgtcgccgctacgct 31157  T

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Target: scaffold0380 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 11061 - 11129
Alignment:
Q  127 gctgaagcggccgctatctcattccgcaccgctacgacaattgacctagcggtttgtcgcggctacgct 195  Q
    |||||||| |||||||| | ||||||| ||||| |||| |||  | |||||||||||||| ||||||||    
T  11061 gctgaagctgccgctatttgattccgctccgctgcgacgattagcgtagcggtttgtcgctgctacgct 11129  T

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