View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_high_21 (Length: 244)
Name: NF3290_high_21
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 35610290 - 35610515
Alignment:
| Q |
4 |
ttaattggtcgtgaataaaagagagattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatcttatttaatagttaaaacttgta |
103 |
Q |
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| T |
35610290 |
ttaattggtcgtgaataaaagaaatattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatcttatttaatagttaaaacttgta |
35610389 |
T |
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| Q |
104 |
tttgtaggggtaggggctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctcggatctgttggattagcagtatggattc |
203 |
Q |
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| T |
35610390 |
tttgtaggggtaggtgctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctaggatctgttggattagcagtatgggctc |
35610489 |
T |
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| Q |
204 |
tctaaaactcagatttgccttctgtg |
229 |
Q |
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| T |
35610490 |
tctaaaactcagatttgccttctgtg |
35610515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 35614776 - 35614965
Alignment:
| Q |
1 |
aaattaattggtcgtgaataaaagagagattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatcttatttaatagttaaaactt |
100 |
Q |
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| T |
35614776 |
aaatgaattgatcatgaataaaagaaaggttgcttctattacaagtcaacaatattcatctgattcaatgttttgaaatctt------tattcaaaactt |
35614869 |
T |
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| Q |
101 |
gtatttgtaggggtaggggctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctcggatctgttggattagcagta |
196 |
Q |
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| T |
35614870 |
ccatttgtaggggtaggtgctgcttggagaacagcaggtgtggagccagggtctacagtagctatttttggactaggatctattggattagcagta |
35614965 |
T |
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