View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3290_high_3 (Length: 497)
Name: NF3290_high_3
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_high_3 |
 | |
|
| [»] scaffold0627 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 8529141 - 8529623
Alignment:
| Q |
1 |
gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8529141 |
gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaacgactgcaacctc |
8529240 |
T |
|
| Q |
101 |
tcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529241 |
tcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaa |
8529340 |
T |
|
| Q |
201 |
aagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaaggatcacacgctcaaacacccactgattggcatgttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529341 |
aagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgttt |
8529440 |
T |
|
| Q |
301 |
aacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529441 |
aacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgta |
8529540 |
T |
|
| Q |
401 |
gtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaaca |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8529541 |
gtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaaca |
8529623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 483
Target Start/End: Original strand, 8535703 - 8536187
Alignment:
| Q |
5 |
agaaatccctttaattctcccatgctaataggcctacaacaaaaaac------attatgatttccaaacacatgtggaggagaaggaaatgactgcaacc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| || || || ||||||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
8535703 |
agaaatccctttaattctcccatgctaatatgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatgacttcagcg |
8535802 |
T |
|
| Q |
99 |
tctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcga |
198 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8535803 |
tctcactttcaaagcagaaaatcaatattgacctttgcagaccatcaaatcttagccaatgtagtgcaccattcacacaagtgggatactttagactcga |
8535902 |
T |
|
| Q |
199 |
aaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaaggatcacacgctcaaacacccactgattggcatgt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||| ||||| ||||||| || |
|
|
| T |
8535903 |
aaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtgtttatctcaagggtcaaacgctcaaactcccacacattggcacgt |
8536002 |
T |
|
| Q |
299 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
398 |
Q |
| |
|
||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||| ||| || ||| | |
|
|
| T |
8536003 |
ttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtcctagccttcttacccgattttgatccg |
8536102 |
T |
|
| Q |
399 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaaca |
483 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536103 |
caatagattcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaaca |
8536187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 52 - 483
Target Start/End: Complemental strand, 1600151 - 1599720
Alignment:
| Q |
52 |
attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatctt |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
1600151 |
attatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgctcaccctcatatctt |
1600052 |
T |
|
| Q |
152 |
atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1600051 |
atccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtg |
1599952 |
T |
|
| Q |
252 |
tgtttatctaaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg |
351 |
Q |
| |
|
||||||||| |||||||||| || |||| || || ||||||| ||||||||| ||| | || || | |||| |||||||||||||||||||||||||| |
|
|
| T |
1599951 |
tgtttatctcaaggatcacaatcttaaactccaacgcattggcacgtttaacatatctcaccctcatgtttatcaccttatattcattagttttaggttg |
1599852 |
T |
|
| Q |
352 |
gaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcact |
451 |
Q |
| |
|
||| |||||| ||||| | |||||| ||| ||| |||||| |||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
1599851 |
gaaaccaaaagcagctcgtccttgccttcctacccgagtttgattcgcggtagattcaggaagtcttatgaactccccagtgattgggttgcagatcact |
1599752 |
T |
|
| Q |
452 |
aatgggtttccaaaagatgggtcagacaaaca |
483 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| |
|
|
| T |
1599751 |
aatgggtttccgaaatatgggtcagacaaaca |
1599720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 52 - 483
Target Start/End: Complemental strand, 9074577 - 9074158
Alignment:
| Q |
52 |
attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatctt |
151 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
9074577 |
attatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatctt |
9074478 |
T |
|
| Q |
152 |
atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
9074477 |
atccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttccaagtg |
9074378 |
T |
|
| Q |
252 |
tgtttatctaaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg |
351 |
Q |
| |
|
||||||||| |||||||||||| || ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
9074377 |
tgtttatctgaaggatcacacggtc------------attggcacgtttaccatgtcttatccacattcttattaccttatattcattagtattaggttg |
9074290 |
T |
|
| Q |
352 |
gaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcact |
451 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||| ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9074289 |
gaatccaaaaccaacttgtcctaccattcttacccgagttcgattcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcact |
9074190 |
T |
|
| Q |
452 |
aatgggtttccaaaagatgggtcagacaaaca |
483 |
Q |
| |
|
| |||||||| || ||| ||||||||||| |
|
|
| T |
9074189 |
gaagggtttccggtagttggttcagacaaaca |
9074158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 52 - 283
Target Start/End: Original strand, 8641635 - 8641866
Alignment:
| Q |
52 |
attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatctt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||| || |||||| |||||||||||||||| ||||||||| | |
|
|
| T |
8641635 |
attatgatttccaaacacatgtggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaatttg |
8641734 |
T |
|
| Q |
152 |
atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg |
251 |
Q |
| |
|
|| |||||||| ||| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
8641735 |
attcaatgaagaacactattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtg |
8641834 |
T |
|
| Q |
252 |
tgtttatctaaaggatcacacgctcaaacacc |
283 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
|
|
| T |
8641835 |
tgtttatctcaaggatcacacgctcaaacacc |
8641866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 55 - 369
Target Start/End: Complemental strand, 2844911 - 2844594
Alignment:
| Q |
55 |
atgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccc---tcaaatctt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||| |||| || ||| |||||| | |
|
|
| T |
2844911 |
atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccccgtttcaaatata |
2844812 |
T |
|
| Q |
152 |
atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg |
251 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||| | || || |||||||||||||||||||||||||||| |||||||| |||| ||||||||| | |
|
|
| T |
2844811 |
atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttccaagcg |
2844712 |
T |
|
| Q |
252 |
tgtttatctaaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg |
351 |
Q |
| |
|
||| ||||| || | ||||||||||||||| | ||||| || |||||| | | |||||| | || |||||||||||||||||||| ||||| |
|
|
| T |
2844711 |
tgtgtatctcgagcactacacgctcaaacaccaaacgattgtttcgtctaacatatttgttccacattatgatcaccttatattcattagttttgggttg |
2844612 |
T |
|
| Q |
352 |
gaatccaaaaccagcttg |
369 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
2844611 |
gaaaccaaaaccagcttg |
2844594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 55 - 369
Target Start/End: Complemental strand, 2856738 - 2856421
Alignment:
| Q |
55 |
atgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctg---accctcaaatctt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||| |||| || | | |||||| | |
|
|
| T |
2856738 |
atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatata |
2856639 |
T |
|
| Q |
152 |
atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg |
251 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||| | || || ||||||||||||||||||||||||||||||||||||| |||| |||||| || | |
|
|
| T |
2856638 |
atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcg |
2856539 |
T |
|
| Q |
252 |
tgtttatctaaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg |
351 |
Q |
| |
|
||| ||||| || | ||||||||||||||| | ||||| | || |||||| | | |||||| | || |||||||||||||||||||| ||||| |
|
|
| T |
2856538 |
tgtgtatctcgagcactacacgctcaaacaccaaacgattgtctcgtctaacatatttgttccacattatgatcaccttatattcattagttttgggttg |
2856439 |
T |
|
| Q |
352 |
gaatccaaaaccagcttg |
369 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
2856438 |
gaaaccaaaaccagcttg |
2856421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 9003734 - 9004028
Alignment:
| Q |
68 |
acatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcac |
167 |
Q |
| |
|
||||||||||| |||||||| || || |||||||||||||| || |||| |||||||||| ||||| || |||||||| |||||||||||||| | |
|
|
| T |
9003734 |
acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcgc |
9003833 |
T |
|
| Q |
168 |
cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaaggat |
267 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| ||| | ||||||||||||||||||||||||||| |||| |||||| |||||| ||||| |||||| |
|
|
| T |
9003834 |
cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtg--tatctcaaggat |
9003931 |
T |
|
| Q |
268 |
cacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaacca |
364 |
Q |
| |
|
| ||||||||||||| | | |||| || | |||||||||| |||| | |||| |||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
9003932 |
cgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatcattagttttaggttgataaccaaaacca |
9004028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 55 - 369
Target Start/End: Complemental strand, 2874348 - 2874031
Alignment:
| Q |
55 |
atgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctg---accctcaaatctt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||| |||| || | | |||||| | |
|
|
| T |
2874348 |
atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatata |
2874249 |
T |
|
| Q |
152 |
atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg |
251 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||| | || || ||||||||||||||||||||||||||||||||||||| |||| |||||| || | |
|
|
| T |
2874248 |
atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcg |
2874149 |
T |
|
| Q |
252 |
tgtttatctaaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg |
351 |
Q |
| |
|
||| ||||| || | ||||||||||||||| | ||||| | || |||||| | | |||| | | || |||||||||||||||||||| ||||| |
|
|
| T |
2874148 |
tgtgtatctcgagcactacacgctcaaacaccaaacgattgtctcgtctaacatatttgttccatattatgatcaccttatattcattagttttgggttg |
2874049 |
T |
|
| Q |
352 |
gaatccaaaaccagcttg |
369 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
2874048 |
gaaactaaaaccagcttg |
2874031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 73 - 378
Target Start/End: Original strand, 8637140 - 8637454
Alignment:
| Q |
73 |
tggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattc |
172 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || |||||| |||||| ||||||| ||||||| |||||| |||||||||| | ||||||| |
|
|
| T |
8637140 |
tggaggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattc |
8637239 |
T |
|
| Q |
173 |
acacaagtgggata------ctttagactcga---aaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaa |
263 |
Q |
| |
|
|||||||||||||| | || | | || || ||||||||| |||||||||||| |||||||||| |||| |||||||||||| | ||||| || |
|
|
| T |
8637240 |
acacaagtgggataacgaagccatatatttgatccaatagaaatttggggatccacttcagcatttctccatgatggtgttccaagtgtatatatctcaa |
8637339 |
T |
|
| Q |
264 |
ggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaacc |
363 |
Q |
| |
|
||| || ||| ||||||||||| ||||| | ||||||||| || ||| | ||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8637340 |
ggaccatacgatcaaacacccaacgattgcctcgtttaacatcactgccccatattcttatcaccttatattcattagttttaggttggaaaccaaaacc |
8637439 |
T |
|
| Q |
364 |
agcttgaccttgcat |
378 |
Q |
| |
|
| |||| ||| |||| |
|
|
| T |
8637440 |
aacttgtcctcgcat |
8637454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 61 - 369
Target Start/End: Complemental strand, 2904848 - 2904537
Alignment:
| Q |
61 |
tccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctc---aaatcttatccaa |
157 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||||| ||||||| | |||| |||||||||| |||| ||||| || || | | |||||| |
|
|
| T |
2904848 |
tccaaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttgttgaccatcttcaactatgatccaa |
2904749 |
T |
|
| Q |
158 |
tgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgttta |
257 |
Q |
| |
|
|| | | | ||||||||||| ||||||| | || || ||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||| || |
|
|
| T |
2904748 |
tgtaatccgccattcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgta |
2904649 |
T |
|
| Q |
258 |
tctaaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatcc |
357 |
Q |
| |
|
||| ||| | | |||||| |||||| | | ||||| || |||||||| | |||||| |||| |||||||||||||||||||| |||||||| || |
|
|
| T |
2904648 |
tctcaagcactagacgctcgaacaccaaatcgttggcccgtctaacatgtttattccacattattatcaccttatattcattagttttgggttggaaacc |
2904549 |
T |
|
| Q |
358 |
aaaaccagcttg |
369 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2904548 |
aaaaccagcttg |
2904537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 266
Target Start/End: Original strand, 8644485 - 8644687
Alignment:
| Q |
73 |
tggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattc |
172 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |||||| |||||| ||||||| | | |||||||||| ||||||||||| |||||||| |
|
|
| T |
8644485 |
tggaggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta |
8644584 |
T |
|
| Q |
173 |
acacaagtgggatactttagactcga---------aaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaa |
263 |
Q |
| |
|
||| |||||||||| | |||||| | || ||||||||||||||| |||||| |||||||||| |||| |||||||||||||||||||| || |
|
|
| T |
8644585 |
acataagtgggataatgaagactcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaa |
8644684 |
T |
|
| Q |
264 |
gga |
266 |
Q |
| |
|
||| |
|
|
| T |
8644685 |
gga |
8644687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 280
Target Start/End: Original strand, 8678087 - 8678304
Alignment:
| Q |
73 |
tggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattc |
172 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| || |||||| |||||| ||| ||| ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
8678087 |
tggaggagaaggaaatgattgcaacttctcagtttctaaacagaaacacaatatagacatttcttgaccctcaaatccgatccaatgaagcgcaccatta |
8678186 |
T |
|
| Q |
173 |
acacaagtgggatactttagactcga---------aaaagaaatttgaggatccacttcaacatttctccaggatgttg-ttccaagtgtgtttatctaa |
262 |
Q |
| |
|
| |||||||||||| || ||| | || |||||||||||||||||||||| |||||||||| |||| || |||||| ||||||||||| | |
|
|
| T |
8678187 |
atacaagtgggataacggagcctcaaatctgatccaatagaaatttgaggatccacttcagcatttctccatgatggtgtttccaattgtgtttatctca |
8678286 |
T |
|
| Q |
263 |
aggatcacacgctcaaac |
280 |
Q |
| |
|
||||||| ||| |||||| |
|
|
| T |
8678287 |
aggatcatacgatcaaac |
8678304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 260
Target Start/End: Complemental strand, 8547957 - 8547753
Alignment:
| Q |
52 |
attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatctt |
151 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||| || |||||||| ||||||| || ||| |||||| |||| | | ||| ||||| |
|
|
| T |
8547957 |
attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcgg |
8547858 |
T |
|
| Q |
152 |
atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg |
251 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | ||| ||| ||||||||||||||||||||| ||||||||| | || |||||| |||| |
|
|
| T |
8547857 |
atccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtg |
8547762 |
T |
|
| Q |
252 |
tgtttatct |
260 |
Q |
| |
|
||| ||||| |
|
|
| T |
8547761 |
tgtgtatct |
8547753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 8547588 - 8547503
Alignment:
| Q |
398 |
gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaaca |
483 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||||| || ||| ||||||||||| |
|
|
| T |
8547588 |
gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaaca |
8547503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 283
Target Start/End: Original strand, 3380803 - 3380943
Alignment:
| Q |
143 |
tcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttg |
242 |
Q |
| |
|
|||||| | |||||||||||| | || |||||||| ||||||| | || || ||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
3380803 |
tcaaatatgatccaatgaagtccgccgttcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttg |
3380902 |
T |
|
| Q |
243 |
ttccaagtgtgtttatctaaaggatcacacgctcaaacacc |
283 |
Q |
| |
|
|||| | |||| ||||| ||| | |||||||| |||||| |
|
|
| T |
3380903 |
ttccgaacgtgtgtatctcaagcactacacgctcgaacacc |
3380943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 8644747 - 8644787
Alignment:
| Q |
326 |
accttatattcattagttttaggttggaatccaaaaccagc |
366 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8644747 |
accttatattcattagttttaggttggaagccaaaagcagc |
8644787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 11354082 - 11354043
Alignment:
| Q |
320 |
cttattaccttatattcattagttttaggttggaatccaa |
359 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11354082 |
cttatcaccttatattcattagttttaggttggaagccaa |
11354043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 11373311 - 11373350
Alignment:
| Q |
320 |
cttattaccttatattcattagttttaggttggaatccaa |
359 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11373311 |
cttatcaccttatattcattagttttaggttggaagccaa |
11373350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 8644833 - 8644889
Alignment:
| Q |
400 |
agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgg |
456 |
Q |
| |
|
||||| || |||||||||||| |||||||| |||||||| ||||| || |||||||| |
|
|
| T |
8644833 |
agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatgg |
8644889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 9004088 - 9004132
Alignment:
| Q |
409 |
aggaagtcttatgaactcccccgtgactgggttgcagatcactaa |
453 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | |||||| |
|
|
| T |
9004088 |
aggaagtcttatgaattccccagtgactgggttgcataccactaa |
9004132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 9443302 - 9443784
Alignment:
| Q |
1 |
gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443302 |
gtatagaaatccctttaattctcccatgctaataggcctactacaataaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctc |
9443401 |
T |
|
| Q |
101 |
tcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaa |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443402 |
tcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaa |
9443501 |
T |
|
| Q |
201 |
aagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaaggatcacacgctcaaacacccactgattggcatgttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9443502 |
aagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcttgttt |
9443601 |
T |
|
| Q |
301 |
aacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443602 |
aacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgta |
9443701 |
T |
|
| Q |
401 |
gtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaaca |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9443702 |
gtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaaca |
9443784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 483
Target Start/End: Complemental strand, 48361756 - 48361272
Alignment:
| Q |
5 |
agaaatccctttaattctcccatgctaataggcctacaacaaaaaac------attatgatttccaaacacatgtggaggagaaggaaatgactgcaacc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || || || |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48361756 |
agaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatgactgcaccc |
48361657 |
T |
|
| Q |
99 |
tctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcga |
198 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48361656 |
tctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactcgagactcga |
48361557 |
T |
|
| Q |
199 |
aaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaaggatcacacgctcaaacacccactgattggcatgt |
298 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
48361556 |
aaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgtttatctcaaggatcacacgctcaaactcccacgcattggcacgt |
48361457 |
T |
|
| Q |
299 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
398 |
Q |
| |
|
||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
48361456 |
ttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttacccgagttcgatacg |
48361357 |
T |
|
| Q |
399 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaaca |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
48361356 |
cagtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaaca |
48361272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 5 - 460
Target Start/End: Original strand, 35780030 - 35780491
Alignment:
| Q |
5 |
agaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35780030 |
agaaatccctttaattctcccatgctaatacgcctatta---------tcatgaattccaaacacatgtggaggagaaggaaatggctgcaacctctcac |
35780120 |
T |
|
| Q |
105 |
tttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaaga |
204 |
Q |
| |
|
|||||| || ||| ||||||||| |||| || ||||||||| | ||||| ||||| ||||||||||||||||||||||||| || || |||| ||| |
|
|
| T |
35780121 |
cttcaaaacaaaaacataatattgacttttgttgcccctcaaatttgatccagtgaagcacaccattcacacaagtgggatacttaaggcttgaaataga |
35780220 |
T |
|
| Q |
205 |
aatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaaggatcacacgctcaaacacccactgattggcatgtttaaca |
304 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |||| || ||||||||||||||| | ||||| ||||| ||||||||||| | ||||||| ||| |||| |
|
|
| T |
35780221 |
aatacgaggatccacttcaacagttctccatgatggtgctccaagtgtgtttatttcgaggataacacgatcaaacacccaatcattggcacgttgaaca |
35780320 |
T |
|
| Q |
305 |
tgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcga---gt------tc--- |
392 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || || |
|
|
| T |
35780321 |
tgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttactcgatccgtatttaatctta |
35780420 |
T |
|
| Q |
393 |
---gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggttt |
460 |
Q |
| |
|
|| | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
35780421 |
aaggagtcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggttt |
35780491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 5130972 - 5131316
Alignment:
| Q |
5 |
agaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctct |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||| || | | | ||||| ||||||||||| ||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
5130972 |
agaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaacacgtgtggaggagaagggaatgattgcaatctct |
5131071 |
T |
|
| Q |
102 |
cattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaa |
201 |
Q |
| |
|
|| ||||||| | |||| ||| | |||||||| | ||| || | ||||||||||||| ||||||||||||| ||| ||| || ||||||| |
|
|
| T |
5131072 |
cactttcaaaactgaaacacaacaatgacctttttctaagatcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaat |
5131171 |
T |
|
| Q |
202 |
agaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctaaaggatcacacgctcaaacacccactgattggcatgttta |
301 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| || ||||||||| |||| ||||| ||||||||||||||||||| |||| || |||| ||||| |
|
|
| T |
5131172 |
agaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgttta |
5131271 |
T |
|
| Q |
302 |
acatgtcttatccacacgcttattaccttatattcattagtttta |
346 |
Q |
| |
|
||||| |||| ||| | |||| ||||||||||||||||||||| |
|
|
| T |
5131272 |
acatgccttacccatatttttatcaccttatattcattagtttta |
5131316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 26324187 - 26324109
Alignment:
| Q |
223 |
aacatttctccaggatgttgttccaagtgtgtttatctaaaggatcacacgctcaaacacccactgattggcatgttta |
301 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||| |||||||||||||||||| ||||| ||||| ||| ||||| |
|
|
| T |
26324187 |
aacatttctccaggacggtgttccaagtgtgttcatcccaaggatcacacgctcaaaaacccattgattagcacgttta |
26324109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 77 - 260
Target Start/End: Original strand, 4948 - 5129
Alignment:
| Q |
77 |
ggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacac |
176 |
Q |
| |
|
||||| |||||||| |||||||||||| | ||||| || ||| ||||| ||| ||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4948 |
ggagagggaaatgattgcaacctctcactgtcaaaacaaaaacacaata--gacgtttcctttccctcaaatctgatccaatgaagtgcaccattcacac |
5045 |
T |
|
| Q |
177 |
aagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatct |
260 |
Q |
| |
|
||||||||| | | |||| ||||| ||||||||||||||||| | | ||||||||| | || |||||| ||||||| ||||| |
|
|
| T |
5046 |
aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatgttccgagtgtgtgtatct |
5129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 5293 - 5349
Alignment:
| Q |
406 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttcc |
462 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
5293 |
ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttcc |
5349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 4849 - 4878
Alignment:
| Q |
5 |
agaaatccctttaattctcccatgctaata |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4849 |
agaaatccctttaattctcccatgctaata |
4878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 260
Target Start/End: Original strand, 16716647 - 16716830
Alignment:
| Q |
77 |
ggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacac |
176 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||| || ||| |||||| ||| ||| | ||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
16716647 |
ggagaaggaaatgaatgcaacttctcactttcaaaacaaaaacacaatatagacatttcccttccctcaaatgtgaaccaatgaagtgcaccattcacac |
16716746 |
T |
|
| Q |
177 |
aagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatct |
260 |
Q |
| |
|
||||||||| | | |||| ||||| ||||||||||||||||| | | ||||||||| | || |||||| ||||||| ||||| |
|
|
| T |
16716747 |
aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatct |
16716830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 397 - 484
Target Start/End: Original strand, 16716982 - 16717069
Alignment:
| Q |
397 |
tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacat |
484 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||| || ||| |||||||||||| |
|
|
| T |
16716982 |
tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacat |
16717069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 16716544 - 16716577
Alignment:
| Q |
1 |
gtatagaaatccctttaattctcccatgctaata |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16716544 |
gtatagaaatccctttaattctcccatgctaata |
16716577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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