View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3290_high_8 (Length: 426)
Name: NF3290_high_8
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_high_8 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 41718646 - 41718220
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41718646 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
41718547 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718546 |
ggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
41718447 |
T |
|
| Q |
201 |
tt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaa |
299 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718446 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaa |
41718347 |
T |
|
| Q |
300 |
agccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718346 |
agccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaat |
41718247 |
T |
|
| Q |
400 |
tgcaaagcccttttgtcaaacatgtat |
426 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
41718246 |
tgcaaaacccttttgtcaaacatgtat |
41718220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 41723372 - 41722946
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41723372 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
41723273 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723272 |
ggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
41723173 |
T |
|
| Q |
201 |
tt-ctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaa |
299 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723172 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaa |
41723073 |
T |
|
| Q |
300 |
agccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723072 |
agccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaat |
41722973 |
T |
|
| Q |
400 |
tgcaaagcccttttgtcaaacatgtat |
426 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
41722972 |
tgcaaaacccttttgtcaaacatgtat |
41722946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 34352484 - 34352226
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34352484 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
34352385 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-t |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||| | |
|
|
| T |
34352384 |
ggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattt |
34352285 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352284 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
34352226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 34360192 - 34359934
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34360192 |
acgtagaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
34360093 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-t |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||| | |
|
|
| T |
34360092 |
ggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattt |
34359993 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359992 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
34359934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 29585381 - 29585640
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29585381 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
29585480 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
29585481 |
agagagtacaattaccactctctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatattt |
29585580 |
T |
|
| Q |
201 |
tt-ctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
258 |
Q |
| |
|
|| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29585581 |
ttcctctcactactctagacaagctttacttgttgttgtgttgttactgatttgggatga |
29585640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 48701902 - 48702228
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48701902 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
48702001 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48702002 |
ggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
48702101 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
48702102 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaag |
48702201 |
T |
|
| Q |
300 |
agccatgcctcaaccattttcatttat |
326 |
Q |
| |
|
||||||||| |||||| || ||||||| |
|
|
| T |
48702202 |
agccatgccccaaccaattgcatttat |
48702228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 48697212 - 48697539
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaataca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48697212 |
acgtggaaacccctcaacaaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactaca |
48697311 |
T |
|
| Q |
100 |
aggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-t |
198 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48697312 |
aggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt |
48697411 |
T |
|
| Q |
199 |
ttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | || |
|
|
| T |
48697412 |
ttttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaa |
48697511 |
T |
|
| Q |
299 |
aagccatgcctcaaccattttcatttat |
326 |
Q |
| |
|
||||||||| |||||| || ||||||| |
|
|
| T |
48697512 |
gagccatgccccaaccaattgcatttat |
48697539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 42266139 - 42265883
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266139 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
42266040 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-t |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
42266039 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattt |
42265940 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265939 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat |
42265883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 42270858 - 42270602
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270858 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
42270759 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-t |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
42270758 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattt |
42270659 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270658 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat |
42270602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 24520106 - 24520363
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24520106 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
24520205 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24520206 |
ggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
24520305 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520306 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
24520363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 30945558 - 30945901
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30945558 |
acgtggaaacccctcaacaaataaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaa |
30945656 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
30945657 |
ggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatat |
30945756 |
T |
|
| Q |
199 |
tttt-ctctcacta-tcta-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgc |
281 |
Q |
| |
|
|||| ||||| ||| |||| ||||| | |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30945757 |
ttttcctctctctattctactaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgc |
30945856 |
T |
|
| Q |
282 |
tatttataggaccgtaaaagccatgcctcaaccattttcatttat |
326 |
Q |
| |
|
|||||||| | | || ||||||||| |||||| || ||||||| |
|
|
| T |
30945857 |
tatttatactagtgaaagagccatgccccaaccaattgcatttat |
30945901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 30950264 - 30950607
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30950264 |
acgtggaaacccctcaacaaataaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaa |
30950362 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat |
198 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
30950363 |
ggaaagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatat |
30950462 |
T |
|
| Q |
199 |
tttt-ctctcacta-tcta-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgc |
281 |
Q |
| |
|
|||| ||||| ||| |||| ||||| | |||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30950463 |
ttttcctctctctattctactaagaacaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgc |
30950562 |
T |
|
| Q |
282 |
tatttataggaccgtaaaagccatgcctcaaccattttcatttat |
326 |
Q |
| |
|
|||||||| | | || ||||||||| |||||| || ||||||| |
|
|
| T |
30950563 |
tatttatactagtgaaagagccatgccccaaccaattgcatttat |
30950607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 10427512 - 10427323
Alignment:
| Q |
5 |
ggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaagga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
10427512 |
ggaaacccctcaacaaataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaagga |
10427413 |
T |
|
| Q |
104 |
gagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc |
203 |
Q |
| |
|
||| ||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10427412 |
gagacaaattacc-ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc |
10427323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 48782925 - 48782850
Alignment:
| Q |
51 |
gagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48782925 |
gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 1979375 - 1979240
Alignment:
| Q |
44 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca |
143 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| |||| ||||||| ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- |
1979281 |
T |
|
| Q |
144 |
aactaacacaaactaggagaaacctcacaggagaaactattt |
185 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
1979280 |
-actagcactaaccaggagaaacctcacatttgaaactattt |
1979240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 17248082 - 17248015
Alignment:
| Q |
4 |
tggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa |
71 |
Q |
| |
|
|||||| |||| || |||||||||||||||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
17248082 |
tggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 5198736 - 5199062
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5198736 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
5198835 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5198836 |
ggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
5198935 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
5198936 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaag |
5199035 |
T |
|
| Q |
300 |
agccatgcctcaaccattttcatttat |
326 |
Q |
| |
|
||||||||| |||||| || ||||||| |
|
|
| T |
5199036 |
agccatgccccaaccaattgcatttat |
5199062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 15603113 - 15602911
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
15603113 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcat |
15603014 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
200 |
Q |
| |
|
|||| |||||||||||| ||| |||| ||||||||||||||| ||||||||| |||| ||||||||||| || | || ||| |||| || ||||||||| |
|
|
| T |
15603013 |
ggagtgtacaattaccattctatcttgtaaataggagaatactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatattt |
15602914 |
T |
|
| Q |
201 |
ttc |
203 |
Q |
| |
|
||| |
|
|
| T |
15602913 |
ttc |
15602911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 28715997 - 28715815
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
28715997 |
acgtggaaacccctcattaaataaggggaaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaa |
28715899 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttc |
188 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||| |||||||| | ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
28715898 |
ggagagtacaattaccaccgtttcctataaataggagaat----actaacactacctaggagaaaccttacaagagaaactatttttc |
28715815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 30396995 - 30397179
Alignment:
| Q |
6 |
gaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggag |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
30396995 |
gaaacccctcaacaaataagggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggag |
30397094 |
T |
|
| Q |
105 |
agtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt |
199 |
Q |
| |
|
|| ||||||| |||| | || ||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
30397095 |
agacaaattacc-ctctatgtt-gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatatt |
30397179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 825715 - 825632
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
83 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825715 |
acgtggaaaccactcaacaaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 830371 - 830288
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830371 |
acgtggaaacccctcaacaaataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
| Q |
15 |
caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta |
114 |
Q |
| |
|
||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| | |||||||| ||||| ||| |||||||||||| |
|
|
| T |
8004292 |
caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta |
8004194 |
T |
|
| Q |
115 |
ccactctctcttataaataggagaatac |
142 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8004193 |
-cactctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 13843876 - 13844014
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | || || |||| |||| ||||| ||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
13843876 |
acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccctttataaatacaa |
13843974 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaat |
140 |
Q |
| |
|
| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843975 |
gaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 830291 - 830209
Alignment:
| Q |
133 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat |
212 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
830209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 825635 - 825553
Alignment:
| Q |
133 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat |
212 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactat |
825553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 13840329 - 13840456
Alignment:
| Q |
12 |
cctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa |
111 |
Q |
| |
|
|||||||||| |||||| |||| || || ||||||||||| || ||| || |||| || |||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
13840329 |
cctcaacaaacaagggggaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaa |
13840425 |
T |
|
| Q |
112 |
ttaccactctctcttataaataggagaatac |
142 |
Q |
| |
|
|||| | ||||||||| ||||| ||||||| |
|
|
| T |
13840426 |
ttacaattctctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5823356 - 5823613
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5823356 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
5823455 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5823456 |
ggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
5823555 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823556 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
5823613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 5818594 - 5818852
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5818594 |
acgtggaaacccctcaactaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
5818693 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5818694 |
ggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
5818793 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818794 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
5818852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 54546120 - 54545906
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
54546120 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaa |
54546021 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
54546020 |
ggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatat |
54545921 |
T |
|
| Q |
199 |
tttt-ctctcactat |
212 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
54545920 |
ttttcctctcactat |
54545906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 2817344 - 2817658
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
2817344 |
acgtggaaacccctcaacaaataaggg-aaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaa |
2817442 |
T |
|
| Q |
101 |
ggagagtacaattacca--ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata- |
197 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
2817443 |
ggagagtacaatcaccactctctctcttataaataggagaatactaactaatacaaact--------------aggagaaactatttttcctctctatat |
2817528 |
T |
|
| Q |
198 |
tttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgt |
296 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |
|
|
| T |
2817529 |
tttttctctcattaccctaaacaagttttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtga |
2817628 |
T |
|
| Q |
297 |
aaaagccatgcctcaaccattttcatttat |
326 |
Q |
| |
|
|| ||||||||| |||||| || ||||||| |
|
|
| T |
2817629 |
aagagccatgccccaaccaattgcatttat |
2817658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24659217 - 24659287
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659217 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31204846 - 31204950
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaataca |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||| | |||||||| || ||||||||||| | |
|
|
| T |
31204846 |
acgtggaaacccctcaacaaataagaggaaaaaatcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatata |
31204943 |
T |
|
| Q |
100 |
aggagag |
106 |
Q |
| |
|
||||||| |
|
|
| T |
31204944 |
aggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 24671173 - 24671293
Alignment:
| Q |
73 |
aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca |
172 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca |
24671262 |
T |
|
| Q |
173 |
ggagaaactatttttcctctctatatttttc |
203 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
24671263 |
ggagaaactatatttcctctctatatttttc |
24671293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
| Q |
57 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac |
115 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 4579241 - 4579134
Alignment:
| Q |
86 |
tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactattt |
185 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||| ||| |||||||||||||||||||||||| | |
|
|
| T |
4579241 |
tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat |
4579152 |
T |
|
| Q |
186 |
ttcctctctatatttttc |
203 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4579151 |
ttcctctctatatttttc |
4579134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4579287 - 4579254
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4579287 |
acgtggaaacccctcaacaaataaggggaaaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 27874071 - 27874327
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874071 |
acgtggaaacccctcaacaaataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
27874170 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
27874171 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattt |
27874270 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874271 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggat |
27874327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 26976212 - 26976470
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26976212 |
acgtggaaacccctcaacaaataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
26976311 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26976312 |
ggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
26976411 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976412 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatga |
26976470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 1234937 - 1234680
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1234937 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
1234838 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-t |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1234837 |
ggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
1234738 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234737 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
1234680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 27878790 - 27879134
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878790 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
27878889 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
27878890 |
ggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatat |
27878989 |
T |
|
| Q |
199 |
tttt-ctctcacta-tcta-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgc |
281 |
Q |
| |
|
|||| ||||| ||| |||| ||||| | |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27878990 |
ttttcctctctctattctactaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgc |
27879089 |
T |
|
| Q |
282 |
tatttataggaccgtaaaagccatgcctcaaccattttcatttat |
326 |
Q |
| |
|
|||||||| | | || ||||||||| |||||| || ||||||| |
|
|
| T |
27879090 |
tatttatactagtgaaagagccatgccccaaccaattgcatttat |
27879134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30966889 - 30966689
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaataca |
99 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
30966889 |
acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcactaagtggaagaaattgcagaacctctctctaaatgca |
30966790 |
T |
|
| Q |
100 |
aggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcac-aggagaaactattt-ttcctctctata |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| ||| | | | |||||||||||||||| || ||||||||||| || ||||||||| |
|
|
| T |
30966789 |
aggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaaacctcacaagtagaaactatttctttctctctata |
30966694 |
T |
|
| Q |
198 |
ttttt |
202 |
Q |
| |
|
||||| |
|
|
| T |
30966693 |
ttttt |
30966689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 30986738 - 30986563
Alignment:
| Q |
9 |
acccctcaacaaataaggggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
106 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
30986738 |
acccctcaacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagag |
30986639 |
T |
|
| Q |
107 |
tacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactattt |
185 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||| |||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
30986638 |
tacaattaccactctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactattt |
30986563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 18968113 - 18967920
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaataca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
18968113 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaataca |
18968014 |
T |
|
| Q |
100 |
aggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt |
199 |
Q |
| |
|
||||||| ||||| | ||||||| | |||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
18968013 |
aggagagacaaattagc-ctctctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatt |
18967924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 21966784 - 21966677
Alignment:
| Q |
3 |
gtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaagg |
102 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| | |
|
|
| T |
21966784 |
gtggaaacccctcaataaataaagggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaag |
21966686 |
T |
|
| Q |
103 |
agagtacaa |
111 |
Q |
| |
|
||||||||| |
|
|
| T |
21966685 |
agagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 6174273 - 6174333
Alignment:
| Q |
153 |
aaactaggagaaacctcacaggagaaactatttttcctctctatatttttctctcactatc |
213 |
Q |
| |
|
||||||| |||| ||| | |||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
6174273 |
aaactagaagaatccttataggagaaactatatttcctttctatatttttctctcactatc |
6174333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 23012619 - 23012667
Alignment:
| Q |
40 |
gggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012619 |
gggcaagagtagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9439453 - 9439710
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9439453 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
9439552 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9439553 |
ggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
9439652 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439653 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
9439710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9444173 - 9444430
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9444173 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaa |
9444272 |
T |
|
| Q |
101 |
ggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9444273 |
ggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattt |
9444372 |
T |
|
| Q |
200 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444373 |
tttctctcactatctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
9444430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 16183712 - 16183905
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaataca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
16183712 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaataca |
16183811 |
T |
|
| Q |
100 |
aggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt |
199 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16183812 |
aggagagacaaattacc-ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatt |
16183901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 30235259 - 30235043
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taaatac |
98 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||| ||| | ||||||||||||||||||||||| || || |
|
|
| T |
30235259 |
acgtggaaacccctcaacgaataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttat |
30235160 |
T |
|
| Q |
99 |
aaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactatttttcctctcta |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
30235159 |
aaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctcta |
30235060 |
T |
|
| Q |
196 |
tattttt-ctctcacta |
211 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
30235059 |
tatttttcctctcacta |
30235043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 8138542 - 8138645
Alignment:
| Q |
3 |
gtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaagg |
102 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
8138542 |
gtggaaaccccttaacaaacaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaagg |
8138641 |
T |
|
| Q |
103 |
agag |
106 |
Q |
| |
|
|||| |
|
|
| T |
8138642 |
agag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 8140046 - 8140183
Alignment:
| Q |
3 |
gtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaagg |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
8140046 |
gtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaagg |
8140145 |
T |
|
| Q |
103 |
agagtacaattaccactctctcttataaataggagaatac |
142 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
8140146 |
agagacaaattacc-ctctctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 5102678 - 5102749
Alignment:
| Q |
6 |
gaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaatta |
78 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102678 |
gaaaaccctcaacaaataaggggaaaaa-ccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27307 - 27500
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaataca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
27307 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaataca |
27406 |
T |
|
| Q |
100 |
aggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt |
199 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27407 |
aggagagacaaattacca-tctctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatt |
27496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 46191467 - 46191274
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaataca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| | |
|
|
| T |
46191467 |
acgtggaaacccctcaacaaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaataga |
46191368 |
T |
|
| Q |
100 |
aggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt |
199 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46191367 |
aggagagacaaattacc-ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatt |
46191278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30697195 - 30697300
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
30697195 |
acgtggaaacccctcaacaaataaggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaa |
30697294 |
T |
|
| Q |
101 |
ggagag |
106 |
Q |
| |
|
|||||| |
|
|
| T |
30697295 |
ggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4130321 - 4130215
Alignment:
| Q |
1 |
acgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaataca |
99 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
4130321 |
acgtggaaatccctcaacaaataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaataca |
4130222 |
T |
|
| Q |
100 |
aggagag |
106 |
Q |
| |
|
||||||| |
|
|
| T |
4130221 |
aggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
| Q |
62 |
ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
142 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| | |||||||| ||||||| || |||||||| | ||||||||||||| |
|
|
| T |
30674787 |
ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac |
30674865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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