View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3290_high_9 (Length: 426)

Name: NF3290_high_9
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3290_high_9
NF3290_high_9
[»] chr3 (13 HSPs)
chr3 (23-416)||(38028504-38028897)
chr3 (23-404)||(38039832-38040212)
chr3 (23-380)||(38036567-38036924)
chr3 (23-369)||(50909969-50910313)
chr3 (19-235)||(38033694-38033914)
chr3 (23-337)||(38031142-38031458)
chr3 (23-272)||(38024755-38025006)
chr3 (23-256)||(55084795-55085028)
chr3 (266-416)||(38033538-38033688)
chr3 (23-200)||(38043912-38044089)
chr3 (34-178)||(50911845-50911989)
chr3 (23-205)||(50904741-50904923)
chr3 (25-205)||(48840661-48840840)
[»] chr8 (4 HSPs)
chr8 (25-416)||(21604492-21604883)
chr8 (23-337)||(21607111-21607427)
chr8 (153-404)||(21609550-21609805)
chr8 (74-184)||(21634603-21634713)
[»] chr4 (41 HSPs)
chr4 (23-202)||(17970308-17970487)
chr4 (18-184)||(27444764-27444930)
chr4 (58-164)||(27503966-27504072)
chr4 (58-211)||(27514935-27515088)
chr4 (32-184)||(27431118-27431270)
chr4 (58-211)||(27468270-27468423)
chr4 (58-207)||(27475526-27475675)
chr4 (37-164)||(27415644-27415771)
chr4 (58-204)||(27423266-27423412)
chr4 (58-164)||(27524568-27524674)
chr4 (57-212)||(27508895-27509050)
chr4 (25-188)||(27523369-27523532)
chr4 (23-170)||(27557498-27557645)
chr4 (40-225)||(27412690-27412875)
chr4 (58-162)||(27570041-27570145)
chr4 (58-205)||(27420452-27420599)
chr4 (25-134)||(27502827-27502936)
chr4 (58-163)||(27563337-27563442)
chr4 (25-188)||(27479912-27480075)
chr4 (25-188)||(27505668-27505831)
chr4 (23-170)||(27526096-27526243)
chr4 (23-149)||(27498424-27498550)
chr4 (58-163)||(27585732-27585837)
chr4 (37-225)||(27425835-27426023)
chr4 (57-149)||(27490003-27490095)
chr4 (25-188)||(27486994-27487157)
chr4 (25-170)||(27500322-27500467)
chr4 (25-192)||(27469471-27469638)
chr4 (25-184)||(27513746-27513905)
chr4 (37-203)||(27497273-27497439)
chr4 (32-184)||(27507783-27507935)
chr4 (88-188)||(27516575-27516675)
chr4 (23-149)||(27501326-27501452)
chr4 (23-188)||(27476696-27476861)
chr4 (79-184)||(27554374-27554479)
chr4 (23-134)||(27424534-27424645)
chr4 (64-170)||(27559224-27559330)
chr4 (58-163)||(27414295-27414400)
chr4 (103-188)||(27460567-27460652)
chr4 (58-154)||(27411456-27411552)
chr4 (106-170)||(27567347-27567411)
[»] chr2 (1 HSPs)
chr2 (23-202)||(3073578-3073757)
[»] chr5 (3 HSPs)
chr5 (23-206)||(1756705-1756888)
chr5 (58-203)||(1754732-1754877)
chr5 (23-86)||(1754309-1754372)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 23 - 416
Target Start/End: Complemental strand, 38028897 - 38028504
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  38028897 ttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatga 38028798  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028797 ccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 38028698  T
Q  223 acacagattagcaagaaaattttgtataatagtcatcatttagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatc 322  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||       ||||||||||||||||| |||| |||||     
T  38028697 acatagattagcaagaaaattttgtacaatagtcatcatttagatttgtttagattttgtttcatttttctacctttggaatgggttataattgtccatt 38028598  T
Q  323 taaatgacaaattcattaagaaccaaattatttgttattatttatttataatcataatgacagaatgcattcaataactcaatcagctcctatg 416  Q
    ||||||||||||| ||| || |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||    
T  38028597 taaatgacaaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatg 38028504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 404
Target Start/End: Complemental strand, 38040212 - 38039832
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38040212 ttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatga 38040113  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040112 ccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 38040013  T
Q  223 acacagattagcaagaaaattttgtataatagtcatcatttagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatc 322  Q
    ||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||       || || ||||||| |||||||| ||||||    
T  38040012 acatagattagcaagaaaattttgtacaatagtcatcatttaga-ttgtaaagattttgtttcattttcctactttaggaatggtttagaattgtccatc 38039914  T
Q  323 taaatgacaaattcattaagaaccaaattatttgttattatttatttataatcataatgacagaatgcattcaataactcaa 404  Q
    | ||||  ||||||||| || | |||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||    
T  38039913 tgaatggaaaattcattcaggaacaaattatttgttattatttatttctaatcataatgacaaaaggcattcaacaactcaa 38039832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 38036924 - 38036567
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38036924 ttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatga 38036825  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38036824 ccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatattacttctcacttcaatgggctataaatcttacactataggagactg 38036725  T
Q  223 acacagattagcaagaaaattttgtataatagtcatcatttagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatc 322  Q
    ||| ||||||| |||||||||||||| |||||| |||  ||||||||||| ||||||| |||||       |||||||||||| ||||||||| ||||||    
T  38036724 acatagattagaaagaaaattttgtacaatagtgatcgcttagatttgtaaagattttatttcattttcctacctttggaatgtgttagaattgtccatc 38036625  T
Q  323 taaatgacaaattcattaagaaccaaattatttgttattatttatttataatcataat 380  Q
    | ||||||||||||||| || | ||||||||||||||| ||||  || ||||||||||    
T  38036624 tgaatgacaaattcattcaggaacaaattatttgttataatttcattctaatcataat 38036567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 50909969 - 50910313
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||||||    
T  50909969 ttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatga 50910068  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
     ||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||| |||||||||||| || ||||||||||||    
T  50910069 tcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaattacttctcgcttcaatgagctataaatctttcaataaaggagactg 50910168  T
Q  223 acacagattagcaagaaaattttgtataatagtcatcatttaga-tttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccat 321  Q
    ||| ||||||||| | |||||||||| ||||||||| ||||| | |||||| |||||||||||||       |||| ||||||||   |||||| |||||    
T  50910169 acatagattagcagggaaattttgtacaatagtcatgatttatattttgtaaagattttgtttcattttcctacctctggaatgg---agaattgtccat 50910265  T
Q  322 ctaaatgacaaattcattaagaaccaaattatttgttattatttattt 369  Q
    || ||||||||||||||| || | ||||||||||||||||||||||||    
T  50910266 ctgaatgacaaattcattcaggaacaaattatttgttattatttattt 50910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 38033914 - 38033694
Alignment:
Q  19 tacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38033914 tacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggat 38033815  T
Q  119 atgaccatcc----aatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaa 214  Q
    ||||||||||    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38033814 atgaccatccaattaatgggcggcatcacaattccctgcacagaagatgttttcttgcatattacttctcgcttcaatgggctataaatcttacactaaa 38033715  T
Q  215 ggagactgacacagattagca 235  Q
    ||||||||||| |||||||||    
T  38033714 ggagactgacatagattagca 38033694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 337
Target Start/End: Complemental strand, 38031458 - 38031142
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  38031458 ttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatga 38031359  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
     || |||||||| |||||||| ||||| |||||||||||  ||||| || | |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  38031358 tcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcgcttcaatgggctataaatcttacactaaagaagactg 38031259  T
Q  223 acacagattagcaagaaaattttgtata--atagtcatcatttagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatcca 320  Q
    ||| |||||||| || | | ||||||||  |||||||| ||||||||||||| ||||||| ||||        |||||||||||||||||| ||| ||||    
T  38031258 acatagattagctaggacactttgtatattatagtcatgatttagatttgtaaagattttttttccttttcatacctttggaatgggttagcattgtcca 38031159  T
Q  321 tctaaatgacaaattca 337  Q
    ||| |||||||||||||    
T  38031158 tctgaatgacaaattca 38031142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 38025006 - 38024755
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  38025006 ttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatga 38024907  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
     || |||||||| |||||||| ||||| |||||||||||  ||||| || | |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  38024906 tcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcgcttcaatgggctataaatcttacactaaagaagactg 38024807  T
Q  223 acacagattagcaagaaaattttgtata--atagtcatcatttagatttgta 272  Q
    ||| |||||||| || | | ||||||||  |||||||| |||||||||||||    
T  38024806 acatagattagctaggacactttgtatactatagtcatgatttagatttgta 38024755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 55084795 - 55085028
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| |||||||||||||||| ||||| | ||| |||||||||||| | ||||||||| ||||||||||||  || ||||||||||| ||||| ||    
T  55084795 ttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacga 55084894  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
     ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||| || |||| ||    
T  55084895 tcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcgcttcaatgaactataaatcttacactgaaagagattg 55084994  T
Q  223 acacagattagcaagaaaattttgtataatagtc 256  Q
    ||| |||||||| || | |||||||| |||||||    
T  55084995 acatagattagctaggacattttgtacaatagtc 55085028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 266 - 416
Target Start/End: Complemental strand, 38033688 - 38033538
Alignment:
Q  266 atttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaaattatttgttattattt 365  Q
    |||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38033688 atttttatagattttgtttcatttttctacctttggaatgggttagaattatccatctaaatgacaaattcattcagaaccaaattatttgttattattt 38033589  T
Q  366 atttataatcataatgacagaatgcattcaataactcaatcagctcctatg 416  Q
    |||| |||| ||||||||||||| |||||||||||||||||||||||||||    
T  38033588 atttctaataataatgacagaatccattcaataactcaatcagctcctatg 38033538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 38043912 - 38044089
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| |||||||||||||||| ||||| | |||||||||||| ||| |||| |||||| ||||| |||||||||| ||||||||||| ||||||||    
T  38043912 ttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatga 38044011  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctata 200  Q
     |||||||||||||||||||||||||| ||||| |||| ||||||||||| | ||||||||| |||||||||| ||||    
T  38044012 tcatccaatgggcggcctcacaattccttgcaccgaaggtgttttcttgcgtgttacttctcgcttcaatgggatata 38044089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 50911989 - 50911845
Alignment:
Q  34 atgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgg 133  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||    
T  50911989 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 50911890  T
Q  134 gcggcctcacaattccctgcacagaagatgttttcttgcatatta 178  Q
    | ||||| |||||||| |||||||||| |||||||||||| ||||    
T  50911889 gtggcctaacaattccttgcacagaaggtgttttcttgcacatta 50911845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 50904923 - 50904741
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||  |||||||||||||||| ||||  | ||| |||||||||||| ||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  50904923 ttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatga 50904824  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatct 205  Q
     ||||||||||| |||||||| ||||| |||| |||||| ||||| |||||||| ||||||| |||||||||||| |||||||    
T  50904823 tcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctcgcttcaatgggctgtaaatct 50904741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 48840840 - 48840661
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| | |||||||| ||||| ||||||| | |||||||||||||||| ||||||||| ||||||||||| |||  ||| ||||||| |||||||| |    
T  48840840 ggagaggagatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatc 48840742  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatct 205  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||  |  ||||||||||||||||||||    
T  48840741 atccaatgggtggcctcacaattccttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatct 48840661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 25 - 416
Target Start/End: Complemental strand, 21604883 - 21604492
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  21604883 ggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgacc 21604784  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgac 224  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604783 atccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgac 21604684  T
Q  225 acagattagcaagaaaattttgtataatagtcatcatttagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatcta 324  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||| ||||| ||    
T  21604683 atagattagcaagaaaattttgtacaatagtcatcatttagatttgtatagattttgtttcatttttctacctttggaatgggttataattgtccattta 21604584  T
Q  325 aatgacaaattcattaagaaccaaattatttgttattatttatttataatcataatgacagaatgcattcaataactcaatcagctcctatg 416  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||    
T  21604583 aatgacaaatttattcaggaccaaattatctgttattatttatttctaatcataataacagaatgcattcaataactcaattagctcctatg 21604492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 337
Target Start/End: Complemental strand, 21607427 - 21607111
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  21607427 ttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatga 21607328  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactg 222  Q
     || |||||||| ||||||||  |||| |||||||||||| ||||| || | |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  21607327 tcacccaatgggtggcctcacggttccttgcacagaagatattttcatggaaattacttctcgcttcaatgggctataaatcttacactaaagaagactg 21607228  T
Q  223 acacagattagcaagaaaattttgtata--atagtcatcatttagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatcca 320  Q
    ||| |||||||| || | | ||||||||  |||||||| ||||||||||||| ||||||| ||||        |||||||||||||||||| ||| ||||    
T  21607227 acatagattagctaggacactttgtatattatagtcatgatttagatttgtaaagattttttttccttttcatacctttggaatgggttagcattgtcca 21607128  T
Q  321 tctaaatgacaaattca 337  Q
    ||| |||||||||||||    
T  21607127 tctgaatgacaaattca 21607111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 153 - 404
Target Start/End: Complemental strand, 21609805 - 21609550
Alignment:
Q  153 cacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataat 252  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  21609805 cacagaagacattttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacatagattagcaagaaaattttgtacaat 21609706  T
Q  253 agtcatcatt----tagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaa 348  Q
    ||||||||||    |||||||||| |||||||||||||       ||||| ||||||| |||||||| |||| || |||| |||||||||| || | |||    
T  21609705 agtcatcatttagctagatttgtaaagattttgtttcattttcctaccttaggaatggtttagaattgtccacctgaatggcaaattcattcaggaacaa 21609606  T
Q  349 attatttgttattatttatttataatcataatgacagaatgcattcaataactcaa 404  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||| |||||||    
T  21609605 attatttgttattatttatttctaatcataatgacaaaaggcattcaacaactcaa 21609550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 21634603 - 21634713
Alignment:
Q  74 cttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgca 173  Q
    |||| |||||| ||||| |||||||||| ||||||||||| |||||||| |||| |||||||||| |||||||||| ||||| ||||||||||||||||     
T  21634603 cttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttcttgcg 21634702  T
Q  174 tattacttctc 184  Q
    | |||||||||    
T  21634703 tgttacttctc 21634713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 17970308 - 17970487
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||||  || ||||||||||||||||| ||    
T  17970308 ttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacga 17970407  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaa 202  Q
     ||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||  ||||||||| |||||||    
T  17970408 tcatccaatgggtggcctcacaattccttgcacagaagatgtttttttgcatgttacttctagcttcaatggtctataaa 17970487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 27444930 - 27444764
Alignment:
Q  18 atacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcgga 117  Q
    |||| |||||||| |||||||| ||||||| ||||| |  |||||||||| |||| | ||||||||| | || |||| ||||||||||||| ||||||||    
T  27444930 atacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcgga 27444831  T
Q  118 tatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 184  Q
    ||||||||||||||||| || ||||||||||| |||| |||||| ||||||||  ||||||||||||    
T  27444830 tatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 27503966 - 27504072
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| ||||| ||||| |    
T  27503966 tcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcaccg 27504065  T
Q  158 aagatgt 164  Q
    |||||||    
T  27504066 aagatgt 27504072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 211
Target Start/End: Original strand, 27514935 - 27515088
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| || ||||    
T  27514935 tcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtacag 27515034  T
Q  158 aagatgttttcttgcatattacttctcacttcaatgggctataaatcttacact 211  Q
    ||||||| |||  |||||| | ||||  ||| ||||| |||| |||||||||||    
T  27515035 aagatgtcttccagcatataatttcttccttgaatggactatgaatcttacact 27515088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 27431270 - 27431118
Alignment:
Q  32 aaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaat 131  Q
    |||||||| ||||||| ||||| |  ||||||||||||||| | ||||||||| | ||||||| ||||||||||||| |||| ||||||||||||||||     
T  27431270 aaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaac 27431171  T
Q  132 gggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 184  Q
     || || ||||||||||| |||| |||||| ||||||||  ||||||||||||    
T  27431170 cggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 27431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 27468423 - 27468270
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    |||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| ||||| |    
T  27468423 tcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgcacgg 27468324  T
Q  158 aagatgttttcttgcatattacttctcacttcaatgggctataaatcttacact 211  Q
    ||||||| |||   ||||| | ||||  ||| ||||| |||| |||||||||||    
T  27468323 aagatgtcttccaacatataatttcttccttgaatggactatgaatcttacact 27468270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 27475675 - 27475526
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| ||| | |    
T  27475675 tcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgctccg 27475576  T
Q  158 aagatgttttcttgcatattacttctcacttcaatgggctataaatctta 207  Q
    ||||||| |||   ||||| ||||||  ||| |||||||||| |||||||    
T  27475575 aagatgtcttccaacatataacttcttgcttgaatgggctatgaatctta 27475526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 27415644 - 27415771
Alignment:
Q  37 aagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcg 136  Q
    ||||| ||||| |||||||  ||||||||||||||| | || |||||| |||||||||||||||| |||||||| || |||||||| ||| | ||||| |    
T  27415644 aagcgatttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtg 27415743  T
Q  137 gcctcacaattccctgcacagaagatgt 164  Q
    ||||||| ||||| ||||||||||||||    
T  27415744 gcctcaccattccttgcacagaagatgt 27415771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 27423266 - 27423412
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| || || ||  | ||||| ||||| ||||||||  |||| ||||| |    
T  27423266 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgg 27423365  T
Q  158 aagatgttttcttgcatattacttctcacttcaatgggctataaatc 204  Q
    |||||||||||   ||||| ||||||||||| ||||| |||| ||||    
T  27423366 aagatgttttccaacatataacttctcacttgaatggactatgaatc 27423412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 27524568 - 27524674
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||| |||||||| || |||||||| ||||||||||| |||||||| ||||| ||||| |    
T  27524568 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcaccg 27524667  T
Q  158 aagatgt 164  Q
    |||||||    
T  27524668 aagatgt 27524674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 27508895 - 27509050
Alignment:
Q  57 gtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcaca 156  Q
    |||||| ||||||||| ||||||||||| ||||||||| ||| || |||||||| || |||||||| ||||||| ||| |||||||| ||||| ||| |     
T  27508895 gtcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgctcc 27508994  T
Q  157 gaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacacta 212  Q
    |||||||| |||   ||||| ||||||  ||||||||| |||| ||||||| ||||    
T  27508995 gaagatgtgttccaacatataacttcttgcttcaatggactatgaatcttatacta 27509050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 27523532 - 27523369
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| |||||||||||||||| || ||    ||||| ||||||||| ||||||| ||| | ||||||||  ||||||||||| |||| | ||||||||    
T  27523532 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 27523433  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 188  Q
    |||||||||| || || || ||||| |||| ||||||  |||||||  ||||||||||||||||    
T  27523432 atccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctcactt 27523369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 27557498 - 27557645
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| |||||||| ||||||| ||||| | ||||||||| |||||| | ||||||||| | ||| ||| |||||| |||||| |||| | |||||     
T  27557498 ttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgt 27557597  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttctt 170  Q
     ||||||||||| || ||||| ||||| |||| |||||||||||||||    
T  27557598 tcatccaatgggtggtctcactattccatgcagagaagatgttttctt 27557645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 27412690 - 27412875
Alignment:
Q  40 cggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcc 139  Q
    |||||||| ||||| |  ||||||||||||||| | | ||||||| |||| ||||||||||| || ||||| || |||||||| ||||||||||| ||||    
T  27412690 cggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcc 27412789  T
Q  140 tcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgaca 225  Q
    |||| ||||| ||||| |||||||| ||    ||||| || |||| ||  |||||||||| ||||| |||| ||| || |||||||    
T  27412790 tcaccattccttgcacggaagatgtctttcaacatataacatctcgctcgaatgggctatgaatctgacaccaaaagaaactgaca 27412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 27570145 - 27570041
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    |||||||| | |||| ||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| |    
T  27570145 tcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgcaccg 27570046  T
Q  158 aagat 162  Q
    |||||    
T  27570045 aagat 27570041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 27420452 - 27420599
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    |||||||||| |||| |||||||||||  |||| |||||||||  |||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||| |    
T  27420452 tcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcacgg 27420551  T
Q  158 aagatgttttcttgcatattacttctcacttcaatgggctataaatct 205  Q
    ||||||| ||    ||||| ||||||  |||||||||||||| |||||    
T  27420552 aagatgtctttcaacatataacttcttgcttcaatgggctatgaatct 27420599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 27502936 - 27502827
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| | |||||||||||||| || || | |||||| ||||| ||| ||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||    
T  27502936 ggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgacc 27502837  T
Q  125 atccaatggg 134  Q
    ||||||||||    
T  27502836 atccaatggg 27502827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 27563442 - 27563337
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||||||| | |  |||||| | ||| ||||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||| ||||| |    
T  27563442 tcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgcactg 27563343  T
Q  158 aagatg 163  Q
    ||||||    
T  27563342 aagatg 27563337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 27479912 - 27480075
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| |||||||||| ||||| || ||    ||||||||||||||| | ||||| ||||| |||||||  ||||| |||||| |||| | |||||| |    
T  27479912 ggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatc 27480011  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 188  Q
    |||||||||| || ||||| ||||| |||| ||||||  |||||||  |||||| |||||||||    
T  27480012 atccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctcactt 27480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 27505831 - 27505668
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| |||||||||||||||| || ||    ||||||||||||||| | ||||| ||| | |||||||  ||||| |||||| |||| | ||||||||    
T  27505831 ggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgacc 27505732  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 188  Q
    |||||||||| || ||||| ||||| |||| ||||||  |||||||  |||| | |||||||||    
T  27505731 atccaatgggtggtctcactattccttgcagagaagagattttcttagatatcatttctcactt 27505668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 27526243 - 27526096
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| |||||||||||||||| || ||    ||||||||||||||| | ||||| ||| | |||||||| ||||| |||||| |||| | ||||||    
T  27526243 ttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaatatga 27526144  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttctt 170  Q
     ||||||| ||| || ||||| ||||| |||| |||||| ||||||||    
T  27526143 tcatccaacgggtggtctcactattccttgcagagaagacgttttctt 27526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 27498424 - 27498550
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| ||||||| || ||||| ||||| |  ||||||||||||||| | || || ||| |||||||||  |||||||||||| |||||| ||||||    
T  27498424 ttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatga 27498523  T
Q  123 ccatccaatgggcggcctcacaattcc 149  Q
     ||||||||||| || ||||| |||||    
T  27498524 tcatccaatgggtggtctcactattcc 27498550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 27585732 - 27585837
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||||||| | |  |||||| | ||| ||||||||||||| ||||| || |||||||| ||||||||||| || ||||| ||||| |||||||    
T  27585732 tcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgcacag 27585831  T
Q  158 aagatg 163  Q
    ||||||    
T  27585832 aagatg 27585837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 27425835 - 27426023
Alignment:
Q  37 aagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcg 136  Q
    ||||||| ||| ||||| |  ||||||||||||||| | ||||||||| |||| |||||||||   |||||||| || |||||||| ||||| ||||| |    
T  27425835 aagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtg 27425934  T
Q  137 gcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgaca 225  Q
    ||||||| ||||| ||||| || ||||| ||    ||||| || |||| ||| ||||| |||| ||||| |||| |||  |||||||||    
T  27425935 gcctcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaatggcctatgaatctgacaccaaaacagactgaca 27426023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 27490003 - 27490095
Alignment:
Q  57 gtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattcc 149  Q
    ||||||||| ||| || | ||||||||| | ||||||| ||||||||||||||| || |||||||| ||||||||||| |||||||| |||||    
T  27490003 gtcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27490095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 27486994 - 27487157
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| |||||||||||||||| |||||    |||||||| |||||| | || |||||| | |||||||  ||||| || ||| |||| | |||||| |    
T  27486994 ggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatc 27487093  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 188  Q
    |||||||||| || || || ||||| |||| ||||||  |||||||  ||||||||||||||||    
T  27487094 atccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctcactt 27487157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 27500467 - 27500322
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| |||||||||| ||||| ||||| |  |||||||| ||||||  |||||| ||| | ||| |||| ||| | || ||| | |||||||||||||    
T  27500467 ggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaattgctgagccaatctgaagaacagttcggatatgacc 27500368  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttctt 170  Q
    |||||||||| ||| |||| ||||| |||| ||||||  |||||||    
T  27500367 atccaatgggtggcatcactattccttgcagagaagaccttttctt 27500322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 27469471 - 27469638
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| |||||||||||||||| ||||| |  ||||| ||||| ||| | ||||| ||| |  ||||||| ||||| || ||| |||| | |||||| |    
T  27469471 ggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaagctgaagaacaatttgaatatgaac 27469570  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaat 192  Q
    |||||||||| || || || ||||| |||| ||||||  |||||||  |||| || ||||||||||||    
T  27469571 atccaatgggtggtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaat 27469638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 27513905 - 27513746
Alignment:
Q  25 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgacc 124  Q
    |||||| |||||||||||||||| ||||| |  ||||||||||||||| | || || ||| | |||||||  ||||| || ||| |||  | |||||| |    
T  27513905 ggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatgatc 27513806  T
Q  125 atccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 184  Q
    |||||||||| || ||||| ||||| |||| |||||| || |||||  |||| |||||||    
T  27513805 atccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctc 27513746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 203
Target Start/End: Complemental strand, 27497439 - 27497273
Alignment:
Q  37 aagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcg 136  Q
    ||||||||||| ||||| |  |||||||| |||||| | |  |||||| | |||||||||||||| |||||||| || |||||||| ||||| |  || |    
T  27497439 aagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaagagtttggatatgatcatcccacaggtg 27497340  T
Q  137 gcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaat 203  Q
    ||||||| ||||| ||||| ||| |||| |||   |  || ||||||| ||| ||||||||||||||    
T  27497339 gcctcaccattccttgcactgaaaatgtcttccaacgcataacttctcgcttgaatgggctataaat 27497273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 27507935 - 27507783
Alignment:
Q  32 aaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaat 131  Q
    |||||||||||||||| || || | |||||| ||||| ||| ||||| ||||| | ||| | || || || |  |||||||| |||||||||||||||||    
T  27507935 aaatgaagcggtttgtaattccaatgtcatatttgaatcaaacttcacttcaagagttgctcagccaggctgtcgaagaatttggatatgaccatccaat 27507836  T
Q  132 gggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 184  Q
    ||| || || |||||||| ||   ||||||| |||||||  |||| |||||||    
T  27507835 gggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctc 27507783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 27516675 - 27516575
Alignment:
Q  88 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcact 187  Q
    |||||||  ||||| |||||| |||| | |||||||||||||||||| || ||||| ||||| |||| |||||| ||||||||  |||| |||||| |||    
T  27516675 ttgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcacttctaact 27516576  T
Q  188 t 188  Q
    |    
T  27516575 t 27516575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 27501326 - 27501452
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| ||||||| |||||||| ||||| |  |||||||| |||||| | |  |||||| |||||||||  |||||||||||| |||| | ||| ||    
T  27501326 ttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacga 27501425  T
Q  123 ccatccaatgggcggcctcacaattcc 149  Q
     ||||||| ||| || ||||| |||||    
T  27501426 tcatccaacgggtggtctcactattcc 27501452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 27476696 - 27476861
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||| ||| |||||||||||||||| || ||    ||||||||||||||| | ||||| ||| |  || |||| |||   |||||| |||| | ||||||    
T  27476696 ttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaatttgaatatga 27476795  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 188  Q
     ||||||||||| || || || ||||| |||| ||||||  |||||||| ||||||| ||||||||    
T  27476796 tcatccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctcactt 27476861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 27554374 - 27554479
Alignment:
Q  79 tttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatatta 178  Q
    |||||| | ||| ||| |||||| |||||| |||| |||||||| ||||||| |||  | ||||||||||| || | |||||| ||||||||  ||||||    
T  27554374 tttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatatta 27554473  T
Q  179 cttctc 184  Q
    ||||||    
T  27554474 cttctc 27554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 27424645 - 27424534
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    ||||||| ||||||| ||||||||| || ||    ||||||||||||||| ||||||||||| | ||| | | |||| | || |||||||  ||||||||    
T  27424645 ttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatga 27424546  T
Q  123 ccatccaatggg 134  Q
     |||||||||||    
T  27424545 tcatccaatggg 27424534  T

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Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 27559330 - 27559224
Alignment:
Q  64 ttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatg 163  Q
    ||||| ||| ||||||||||| | || || || ||| | || ||||| || |||||||| ||||||||||| || ||||||||||| ||||  |||||||    
T  27559330 ttgaatcaatcttcatttcaatagttattaagccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatg 27559231  T
Q  164 ttttctt 170  Q
     ||||||    
T  27559230 ctttctt 27559224  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 27414400 - 27414295
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||||||| | ||||||||| | ||  | | |||| | || |||||||| |||||||| ||||||||||| || || |||||||| ||||  |    
T  27414400 tcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtg 27414301  T
Q  158 aagatg 163  Q
    ||||||    
T  27414300 aagatg 27414295  T

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Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 27460567 - 27460652
Alignment:
Q  103 gaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 188  Q
    |||||| |||| | |||||| ||||||||||| || ||||| ||||| |||| ||||||  |||||||| |||| || ||||||||    
T  27460567 gaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcactt 27460652  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 27411552 - 27411456
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgca 154  Q
    ||||||||||||||| | || |||||| | ||  | | |||||| || |||||||| |||||||| ||||| ||||| || ||||||||||| ||||    
T  27411552 tcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgca 27411456  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 27567347 - 27567411
Alignment:
Q  106 gaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttctt 170  Q
    |||||||| || ||||| ||||||||||| || ||||||||||| ||||  ||||||| ||||||    
T  27567347 gaagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttctt 27567411  T

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Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 3073578 - 3073757
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||||  || ||||||||||||||||| ||    
T  3073578 ttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacga 3073677  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaa 202  Q
     ||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||  ||||||||| |||||||    
T  3073678 tcatccaatgggtggcctcacaattccttgcacagaagatgtttttttgcatgttacttctagcttcaatggtctataaa 3073757  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 1756888 - 1756705
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatga 122  Q
    |||||||| ||  |||||||||||| ||||| |  ||||||||||||||| | || |||||| |||||||||||||||| || |||||||| ||||||||    
T  1756888 ttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggatatga 1756789  T
Q  123 ccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcacttcaatgggctataaatctt 206  Q
     || || ||||| |||||||| ||||| ||||| |||||||  |||   |||||||| |||  ||| |||||||||| ||||||    
T  1756788 tcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatattacctcttgcttgaatgggctatgaatctt 1756705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 1754732 - 1754877
Alignment:
Q  58 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacag 157  Q
    ||||||||||| ||| | || ||||||  ||||||||||||||| | |||||| || |||||||| ||||||||||| |||||||| ||||  |||||||    
T  1754732 tcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacag 1754831  T
Q  158 aagatgttttcttgcatattacttctcacttcaatgggctataaat 203  Q
    ||||||| |||    |||| ||||||  ||| ||||||||||||||    
T  1754832 aagatgtcttcgaaaatataacttctagcttaaatgggctataaat 1754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 1754372 - 1754309
Alignment:
Q  23 ttggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaa 86  Q
    |||||||  |||||||||||||||| ||||||   ||||||||||||||| | |||||||||||    
T  1754372 ttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaa 1754309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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