View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_low_13 (Length: 350)
Name: NF3290_low_13
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 141 - 347
Target Start/End: Original strand, 20218016 - 20218214
Alignment:
| Q |
141 |
gctcaaaacagggccaccactacgttaaatccccacttgttccaataaccaatctcacaaggcacaactaagtccattccaaaaccagcctcacactaag |
240 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
20218016 |
gctcaaaatagggccaccactacgttaaatccccacttgttccaataaccaa--------gtcacaactaagtccattccaaaaccagcctcacactaag |
20218107 |
T |
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| Q |
241 |
ccgaatccacacttgtttcaataagttcgaacgtcatatttccacagtgttcttgaacatttttaacatcatccttatgaaagagatccgactctgcaaa |
340 |
Q |
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||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20218108 |
ccgaatccacacttgtttcaataagtttgaacatcatatttgcacaatgttcttgaacatttttaacatcatccttatgaaagagatatgactctgcaaa |
20218207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 20217891 - 20217957
Alignment:
| Q |
16 |
atcataaaactataatctcattgcaagtaaaacaatgtaactacactatcaaggtaagatttggacc |
82 |
Q |
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| T |
20217891 |
atcataaaactataatgtcattgcaactaaaacagtgtaactacactatcaaggtaagatttggacc |
20217957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 17792544 - 17792478
Alignment:
| Q |
257 |
ttcaataagttcgaacgtcatatttccacagtgttcttgaacatttttaacatcatccttatgaaag |
323 |
Q |
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| T |
17792544 |
ttcaataagttccagaatcaaatttgcacagtgttcttgaacatttttaacttcatccttatgaaag |
17792478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 23468112 - 23468010
Alignment:
| Q |
221 |
aaaaccagcctcacactaagccgaatccacacttgtttcaataagttcgaacgtcatatttccacagtgttcttgaacatttttaacatcatccttatga |
320 |
Q |
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|||| ||| ||||| ||||| |||| |||| ||| |||||||||||| | |||||||| ||||||||||||||||||||||| |||| ||||||| |
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| T |
23468112 |
aaaatcagtctcaccctaagatgaatacacatttgcttcaataagttctataatcatatttatgcagtgttcttgaacatttttaacttcatacttatga |
23468013 |
T |
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| Q |
321 |
aag |
323 |
Q |
| |
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||| |
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| T |
23468012 |
aag |
23468010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 5705550 - 5705595
Alignment:
| Q |
278 |
atttccacagtgttcttgaacatttttaacatcatccttatgaaag |
323 |
Q |
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|||| ||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
5705550 |
atttgcacagcgttcttgaacatttttaacttcatccttttgaaag |
5705595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 3594000 - 3593955
Alignment:
| Q |
278 |
atttccacagtgttcttgaacatttttaacatcatccttatgaaag |
323 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
3594000 |
atttgcacagcgttcttgaacatttttaacttcatccttttgaaag |
3593955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 2889870 - 2889825
Alignment:
| Q |
278 |
atttccacagtgttcttgaacatttttaacatcatccttatgaaag |
323 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
2889870 |
atttgcacagcgttcttgaacatttttaacttcatccttttgaaag |
2889825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 16182179 - 16182224
Alignment:
| Q |
278 |
atttccacagtgttcttgaacatttttaacatcatccttatgaaag |
323 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
16182179 |
atttgcacagcgttcttgaacatttttaacttcatccttttgaaag |
16182224 |
T |
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