View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_low_14 (Length: 318)
Name: NF3290_low_14
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 67 - 302
Target Start/End: Original strand, 31858720 - 31858958
Alignment:
| Q |
67 |
ggataatcttaggtcatatgcaactgataatgttaacaggtatcatgttatcaagcccaatgtgcaagcattagtattttatttgatgattggtattttt |
166 |
Q |
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| T |
31858720 |
ggataatcttaggtcatatgcaactgataatgttaacaggtatcatgttatcaagcccaatgtgcaagcattagtattttatttgatgattggtattttt |
31858819 |
T |
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| Q |
167 |
a--ttttatattcgtaaaacattaaatgactgcata-cataaattttcagaatctacatgatagatttgcttttgttgtaagtacaattgaacttagtcg |
263 |
Q |
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| T |
31858820 |
attttttatattcgttaaacattaaatgactgcatatcataaattttcagaatccatatgatagatttgcttttgttgtaagtacaattgaacttagtgg |
31858919 |
T |
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| Q |
264 |
agtttcctcatgatagcattcaaggcttgggaagttttt |
302 |
Q |
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| T |
31858920 |
agtttcctcatgatagcattcaaggcttgggaagttttt |
31858958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 63 - 302
Target Start/End: Original strand, 31867559 - 31867800
Alignment:
| Q |
63 |
tttaggataatcttaggtcatatgcaactgataatgttaacaggtatcatgttatcaagcccaatgtgcaagcattagtattttatttgatgattggtat |
162 |
Q |
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| T |
31867559 |
tttaggataatcttaggtcatatgcaactgataatgttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatat |
31867658 |
T |
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| Q |
163 |
ttttattttatattcgtaaaacattaaatgactgcata-cataaa-ttttcagaatctacatgatagattt-gcttttgttgtaagtacaattgaactta |
259 |
Q |
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| T |
31867659 |
tttta-tttatatttgtaaaacattaaatgactgcatatcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaactta |
31867757 |
T |
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| Q |
260 |
gtcgagtttcctcatgatagcattcaaggcttgggaagttttt |
302 |
Q |
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| T |
31867758 |
gtggagtttcctcatgatagcattcaggttttgggaagttttt |
31867800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 31858635 - 31858688
Alignment:
| Q |
12 |
gaatatatgcacttcatatatcaaacggaggaaagagatctacaacacatgttt |
65 |
Q |
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| T |
31858635 |
gaatatatgcacttcatatatcaaacggaggaaagagatctacaacacatgttt |
31858688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 31867479 - 31867531
Alignment:
| Q |
13 |
aatatatgcacttcatatatcaaacggaggaaagagatctacaacacatgttt |
65 |
Q |
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| T |
31867479 |
aatatatgaacttcatatatcaaaagggggaaataaatttacaacacatgttt |
31867531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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