View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_low_16 (Length: 288)
Name: NF3290_low_16
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 12872790 - 12872520
Alignment:
| Q |
1 |
tatcatctagaattagggttggtcatgcaataatttctagtctcacttatccgataaatccaacaatcaaatgaaatcgttgatcaatttggtaattgtt |
100 |
Q |
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| T |
12872790 |
tatcatctagaattagggttggtcatgcaataatttctagtctcacttatccgataaatccaacaatcaaatgaaatcgttgatcaatttggtaattgtt |
12872691 |
T |
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| Q |
101 |
aaaatgcaaagagtgattacaggttccgtgaaagatactggaagatggtttaacggctcgttatggtaaacaaaaactaaatcaaaataccattgttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12872690 |
aaaatgcaaagagtgattacaggttccgtgaaagataccagaagatggtttaacggctcgttatggtaaacaaaaactaaatcaaaataccattgttcat |
12872591 |
T |
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| Q |
201 |
cgaaataaaagagaagaagaataaccttaatagaggatgaatattttctctaaaacttgaaacacttcact |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12872590 |
cgaaataaaagagaagaagaataaccttaatagaggatgaatattttctctaaaacttgaaacacttcact |
12872520 |
T |
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