View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3290_low_2 (Length: 602)

Name: NF3290_low_2
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3290_low_2
NF3290_low_2
[»] chr6 (6 HSPs)
chr6 (317-591)||(27131412-27131687)
chr6 (171-299)||(27131731-27131860)
chr6 (19-103)||(27131928-27132012)
chr6 (512-585)||(27994478-27994551)
chr6 (341-430)||(4036805-4036893)
chr6 (481-538)||(20611642-20611699)
[»] chr5 (11 HSPs)
chr5 (512-591)||(36869331-36869410)
chr5 (480-539)||(2024833-2024892)
chr5 (483-539)||(34307327-34307383)
chr5 (480-539)||(11242511-11242570)
chr5 (484-539)||(24395590-24395645)
chr5 (480-538)||(26719090-26719148)
chr5 (480-538)||(26988834-26988892)
chr5 (483-539)||(2411940-2411996)
chr5 (371-435)||(34425655-34425719)
chr5 (371-459)||(15639206-15639296)
chr5 (351-435)||(2024928-2025010)
[»] chr8 (4 HSPs)
chr8 (480-539)||(34048903-34048962)
chr8 (351-430)||(5973318-5973398)
chr8 (512-564)||(9108000-9108052)
chr8 (480-539)||(15167609-15167668)
[»] chr7 (7 HSPs)
chr7 (480-539)||(27237618-27237677)
chr7 (480-538)||(23020678-23020736)
chr7 (481-539)||(12419692-12419750)
chr7 (480-539)||(7398299-7398358)
chr7 (392-457)||(7398225-7398291)
chr7 (326-424)||(36903599-36903696)
chr7 (482-538)||(20153053-20153109)
[»] chr2 (5 HSPs)
chr2 (480-538)||(16227565-16227623)
chr2 (480-539)||(11952802-11952861)
chr2 (480-538)||(29694231-29694289)
chr2 (482-538)||(13800741-13800797)
chr2 (480-539)||(21665896-21665955)
[»] chr4 (8 HSPs)
chr4 (484-539)||(36118652-36118707)
chr4 (483-538)||(40217086-40217141)
chr4 (480-531)||(52468139-52468190)
chr4 (514-554)||(11906971-11907011)
chr4 (514-554)||(11911217-11911257)
chr4 (396-459)||(27111814-27111878)
chr4 (396-460)||(36363129-36363196)
chr4 (486-526)||(37746928-37746968)
[»] chr3 (4 HSPs)
chr3 (480-539)||(42453263-42453322)
chr3 (480-539)||(52374515-52374574)
chr3 (480-564)||(36179917-36180003)
chr3 (482-538)||(26279393-26279449)
[»] chr1 (2 HSPs)
chr1 (481-539)||(10926139-10926197)
chr1 (481-537)||(39134920-39134976)
[»] scaffold0007 (1 HSPs)
scaffold0007 (483-539)||(231055-231111)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 317 - 591
Target Start/End: Complemental strand, 27131687 - 27131412
Alignment:
Q  317 tagtgtgcagggccggactttgaggtgcaaaagactcaatagagctgcgtctctccaaggtatgagtctcataataaatttatagctcagtagtactatt 416  Q
    |||||| ||||||||||||||| |||||||||  |||||| |||||| | |||| ||||||||| |||||||||||||||||||| ||||||||||| ||    
T  27131687 tagtgtacagggccggactttg-ggtgcaaaaagctcaatggagctgagcctcttcaaggtatgggtctcataataaatttatagttcagtagtactgtt 27131589  T
Q  417 aagtactatcccac--aaaaagattcttattctctttctctctgaattctgatatcacgcattatcgcgttccatcaccatcacttcatcgtcctttcct 514  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  27131588 aagtactaccccactaaaaaagattcttattctctttctctctgaattctgatatcacgcattatcgcgttccatcaccatcacttcaccgccctttcct 27131489  T
Q  515 tttcttcttccccgattcgatttccgacctggcaaccacaaattctcaactcatattcaatagataacacaggttct 591  Q
    ||||| ||| ||| ||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||| ||||    
T  27131488 tttctgctttcccaattcgatttccgatcaggcaaccacaaattctcaacacatattcaatagatcacacagattct 27131412  T

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Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 27131860 - 27131731
Alignment:
Q  171 gctctcgaaagtctttatatgtatttaacacttgttagaggagttaaagaattcacaatccatgatggcatagttatttggaa-aaaataatatcattgt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  27131860 gctctcgaaagtctttatatgtatttaacacttgttagaggagttaaagaattcagaatccatgatggcatagttatttggaaaaaaataatatcattgt 27131761  T
Q  270 tgagaagtattagttgaatactcacaagtt 299  Q
    ||||||||||||||||||||||||||||||    
T  27131760 tgagaagtattagttgaatactcacaagtt 27131731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 27132012 - 27131928
Alignment:
Q  19 aaaatgacattgtccatatggtgtaagacttgcatcctttatactcaatagaatgacctcgttttagacactgaatcaattgatc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27132012 aaaatgacattgtccatatggtgtaagacttgcatcctttatactcaatagaatgacctcgttttagacactgaatcagttgatc 27131928  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 585
Target Start/End: Original strand, 27994478 - 27994551
Alignment:
Q  512 ccttttcttcttccccgattcgatttccgacctggcaaccacaaattctcaactcatattcaatagataacaca 585  Q
    |||||||||||| ||||||||||||| |||||  || | |||| ||||||||| || |||||||||||||||||    
T  27994478 ccttttcttctttcccgattcgattttcgaccaagctatcacagattctcaacacagattcaatagataacaca 27994551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 4036805 - 4036893
Alignment:
Q  341 gtgcaaaagactcaatagagctgcgtctctccaaggtatgagtctcataataaatttatagctcagtagtactattaagtactatcccac 430  Q
    ||||||||  |||||| ||| || | ||| |||| ||||||| |||| || ||||| ||||| ||||||||||| |||||||||||||||    
T  4036805 gtgcaaaacgctcaatggagttgggcctccccaatgtatgagcctcaaaaaaaatt-atagcccagtagtactactaagtactatcccac 4036893  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Original strand, 20611642 - 20611699
Alignment:
Q  481 gcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||||||||||||  || ||||   |||||||||||||||||||||||| ||||||    
T  20611642 gcgttccatcaccattgctccatcagactttccttttcttcttccccgatttgatttc 20611699  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 591
Target Start/End: Complemental strand, 36869410 - 36869331
Alignment:
Q  512 ccttttcttcttccccgattcgatttccgacctggcaaccacaaattctcaactcatattcaatagataacacaggttct 591  Q
    |||||||||||||||||||||||||||||||| ||| || ||| ||||||||| || ||| |||||||||||||| ||||    
T  36869410 ccttttcttcttccccgattcgatttccgaccaggctactacagattctcaacacaaatttaatagataacacagattct 36869331  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 2024892 - 2024833
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||    
T  2024892 cgcgttccatcaccatcactccatctgactttccttttcttcttccccgatttgatttcc 2024833  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 34307383 - 34307327
Alignment:
Q  483 gttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||||||||||| |||||  ||||||||||||||||| |||||| |||||||    
T  34307383 gttccatcaccatcactccatcggactttccttttcttcttctccgatttgatttcc 34307327  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 11242570 - 11242511
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||| ||||||| ||  |  ||||||||||||||||||||||||||||||||    
T  11242570 cgcgttccatcatcatcactccaatggactttccttttcttcttccccgattcgatttcc 11242511  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 24395590 - 24395645
Alignment:
Q  484 ttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||||||| ||||   |||||||||||||||||||||||| |||||||    
T  24395590 ttccatcaccatcactccatcagactttccttttcttcttccccgatttgatttcc 24395645  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 26719148 - 26719090
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||||||||||||||||| |||||  |||||||||||||||| || |||| ||||||    
T  26719148 cgcgttccatcaccatcactgcatcgaactttccttttcttctttcctgatttgatttc 26719090  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 26988892 - 26988834
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||||||||||||||||| |||||  |||||||||||||||| || |||| ||||||    
T  26988892 cgcgttccatcaccatcactgcatcgaactttccttttcttctttcctgatttgatttc 26988834  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 2411940 - 2411996
Alignment:
Q  483 gttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||||||||||| ||||   |||||||||||||||||||| ||| |||||||    
T  2411940 gttccatcaccatcactccatcagactttccttttcttcttccccaatttgatttcc 2411996  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 34425655 - 34425719
Alignment:
Q  371 ccaaggtatgagtctcataataaatttatagctcagtagtactattaagtactatcccacaaaaa 435  Q
    ||||||||||||| ||| || ||||||||||| |||||||| || ||||||||| ||||| ||||    
T  34425655 ccaaggtatgagtttcaaaaaaaatttatagcccagtagtattactaagtactaccccactaaaa 34425719  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 459
Target Start/End: Original strand, 15639206 - 15639296
Alignment:
Q  371 ccaaggtatgagtctcataataaatttatagctcagtagtactattaagtactatcccac-aaaaagatt-cttattctctttctctctga 459  Q
    |||||||||| | || | || ||| ||||||  ||||||||||| ||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  15639206 ccaaggtatgggcctaaaaaaaaaattatagtccagtagtactactaagtactaccccactaaaaaaattacttattctctttctctctga 15639296  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 2025010 - 2024928
Alignment:
Q  351 ctcaatagagctgcgtctctccaaggtatgagtctcataataaatttatagctcagtagtactattaagtactatcccacaaaaa 435  Q
    ||||||||| ||||| ||| |||||||||| |||| | || ||  ||||||| ||||||||||| ||||||||| ||||| ||||    
T  2025010 ctcaatagaactgcgcctccccaaggtatgggtctaaaaaaaa--ttatagcccagtagtactactaagtactaccccactaaaa 2024928  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 34048962 - 34048903
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||| |||||||    
T  34048962 cgcgttccatcaccatcactccatcggactttccttttcttcttccccgatttgatttcc 34048903  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 5973398 - 5973318
Alignment:
Q  351 ctcaatagagctgcgtctctccaaggtatgagtctcataataaat-ttatagctcagtagtactattaagtactatcccac 430  Q
    |||||| |||||| | ||| |||||||||| |||| | ||||||  |||||||||||||||| |||||||||||| |||||    
T  5973398 ctcaatggagctgggcctccccaaggtatgggtcttaaaataaaaattatagctcagtagtattattaagtactaccccac 5973318  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 564
Target Start/End: Original strand, 9108000 - 9108052
Alignment:
Q  512 ccttttcttcttccccgattcgatttccgacctggcaaccacaaattctcaac 564  Q
    ||||| ||||||||| ||||| |||||||||| ||| ||||||||||||||||    
T  9108000 cctttccttcttccctgattcaatttccgaccaggctaccacaaattctcaac 9108052  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 15167668 - 15167609
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||||||||||||||  |||   ||||||||||||||||| |||||| |||||||    
T  15167668 cgcgttccatcaccatcactctatcagactttccttttcttcttctccgatttgatttcc 15167609  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 27237677 - 27237618
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||| |||||||    
T  27237677 cgcgttccatcaccatcactccatcggactttccttttcttcttccccgatttgatttcc 27237618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 23020736 - 23020678
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||||||||||||||| | |||||  |||||||||||||||||||||||| ||||||    
T  23020736 cgcgttccatcaccatcattccatcggactttccttttcttcttccccgatttgatttc 23020678  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 539
Target Start/End: Complemental strand, 12419750 - 12419692
Alignment:
Q  481 gcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||||||||||||| |||||  |||||||||| |||||| |||||| |||||||    
T  12419750 gcgttccatcaccatcactccatcggactttcctttttttcttctccgatttgatttcc 12419692  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 539
Target Start/End: Original strand, 7398299 - 7398358
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||| ||||||| |||||  || ||||||||||| ||||||||| |||||||    
T  7398299 cgcgttccatcaacatcactccatcggactctccttttcttcatccccgatttgatttcc 7398358  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 7398225 - 7398291
Alignment:
Q  392 aaatttatagctcagtagtactattaagtacta-tcccacaaaaagattcttattctctttctctct 457  Q
    ||||||||||| ||||||||||| |||||||||  |||  ||||| ||||||||| |||||||||||    
T  7398225 aaatttatagcccagtagtactactaagtactaccccctaaaaaaaattcttattttctttctctct 7398291  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 36903696 - 36903599
Alignment:
Q  326 gggccggactttgaggtgcaaaagactcaatagagctgcgtctctccaaggtatgagtctcataataaatttatagctcagtagtactattaagtacta 424  Q
    ||||||||  ||| ||||||||   |||||| |||||| | ||||||||||||| ||||| | |||||| ||||||  ||||||||||| |||||||||    
T  36903696 gggccggatcttggggtgcaaagagctcaattgagctgggcctctccaaggtataagtctaaaaataaa-ttatagtccagtagtactactaagtacta 36903599  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 20153053 - 20153109
Alignment:
Q  482 cgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||||||||||||||| ||| |  ||||  |||||||||||||||||| ||||||    
T  20153053 cgttccatcaccatcactccattggactttgtttttcttcttccccgatttgatttc 20153109  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 16227623 - 16227565
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  16227623 cgcgtttcatcaccatcactccatcggcctttccttttcttcttccccgatttgatttc 16227565  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 11952861 - 11952802
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||||||||||| || ||  |||||||||||||||||||||||| |||||||    
T  11952861 cgcgttccatcaccatcactccaccgggctttccttttcttcttccccgatttgatttcc 11952802  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 538
Target Start/End: Original strand, 29694231 - 29694289
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    ||||||||||||||||||||| |||    ||||||||||||||||||||||| ||||||    
T  29694231 cgcgttccatcaccatcactttatcaaattttccttttcttcttccccgatttgatttc 29694289  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 538
Target Start/End: Complemental strand, 13800797 - 13800741
Alignment:
Q  482 cgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||||||||||||||| |||||  ||||| ||||||||||| |||||| ||||||    
T  13800797 cgttccatcaccatcactccatcggactttcattttcttcttctccgatttgatttc 13800741  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 21665955 - 21665896
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||||||||| ||||||| ||||   |||||||||||||||||||| ||| |||||||    
T  21665955 cgcgttccatcatcatcactccatcagactttccttttcttcttccccaatttgatttcc 21665896  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 539
Target Start/End: Complemental strand, 36118707 - 36118652
Alignment:
Q  484 ttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||| |||||||    
T  36118707 ttccattaccatcactccatcggactttccttttcttcttccccgatttgatttcc 36118652  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 40217086 - 40217141
Alignment:
Q  483 gttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    ||||||||||||||||| ||||   |||||||||||||||||||||||| ||||||    
T  40217086 gttccatcaccatcactccatcagactttccttttcttcttccccgatttgatttc 40217141  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 531
Target Start/End: Original strand, 52468139 - 52468190
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgatt 531  Q
    |||||||||||||||||||| ||||   |||||||||| |||||||||||||    
T  52468139 cgcgttccatcaccatcactccatcagactttcctttttttcttccccgatt 52468190  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 554
Target Start/End: Complemental strand, 11907011 - 11906971
Alignment:
Q  514 ttttcttcttccccgattcgatttccgacctggcaaccaca 554  Q
    ||||||||||| |||||||||||| ||||| ||||||||||    
T  11907011 ttttcttcttctccgattcgattttcgaccaggcaaccaca 11906971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 554
Target Start/End: Complemental strand, 11911257 - 11911217
Alignment:
Q  514 ttttcttcttccccgattcgatttccgacctggcaaccaca 554  Q
    ||||||||||| |||||||||||| ||||| ||||||||||    
T  11911257 ttttcttcttctccgattcgattttcgaccaggcaaccaca 11911217  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 459
Target Start/End: Original strand, 27111814 - 27111878
Alignment:
Q  396 ttatagctcagtagtactattaagtactatccca-caaaaagattcttattctctttctctctga 459  Q
    ||||||| ||||||||||| ||||||||| ||||  ||||| || |||||||||||| |||||||    
T  27111814 ttatagcccagtagtactactaagtactaccccattaaaaaaatccttattctctttatctctga 27111878  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 36363196 - 36363129
Alignment:
Q  396 ttatagctcagtagtactattaagtactatcccac--aaaaagattc-ttattctctttctctctgaa 460  Q
    |||||| |||||||||||| ||||||||| |||||  ||||| |||| ||||||||||||||| ||||    
T  36363196 ttatagttcagtagtactactaagtactaccccactaaaaaacattctttattctctttctctttgaa 36363129  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 37746968 - 37746928
Alignment:
Q  486 ccatcaccatcacttcatcgtcctttccttttcttcttccc 526  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  37746968 ccatcaccatcactccatcggactttccttttcttcttccc 37746928  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 539
Target Start/End: Original strand, 42453263 - 42453322
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||||||||||||||  |||   |||||||||||||||||||||||| |||||||    
T  42453263 cgcgttccatcaccatcactctatcagactttccttttcttcttccccgatttgatttcc 42453322  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 539
Target Start/End: Original strand, 52374515 - 52374574
Alignment:
Q  480 cgcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||||||||||||||| |||   |||||||||||||||||||| ||| |||||||    
T  52374515 cgcgttccatcaccatcactttatcagactttccttttcttcttccccaatttgatttcc 52374574  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 564
Target Start/End: Complemental strand, 36180003 - 36179917
Alignment:
Q  480 cgcgttccatcac--catcacttcatcgtcctttccttttcttcttccccgattcgatttccgacctggcaaccacaaattctcaac 564  Q
    |||||||||||||  || |||| |||||  ||| | ||||||||||| | ||||||||||| |||| ||||||| ||||||||||||    
T  36180003 cgcgttccatcacaccaccactccatcgaacttccgttttcttcttctctgattcgatttcagaccaggcaaccgcaaattctcaac 36179917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 26279393 - 26279449
Alignment:
Q  482 cgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttc 538  Q
    |||||||||||||||||| || |   |||||||||||||| ||||||||| ||||||    
T  26279393 cgttccatcaccatcactccaacaaactttccttttcttcatccccgatttgatttc 26279449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 539
Target Start/End: Complemental strand, 10926197 - 10926139
Alignment:
Q  481 gcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||||||||||||| ||||   ||||||||||||||||| |||||| |||||||    
T  10926197 gcgttccatcaccatcactccatcagactttccttttcttcttctccgatttgatttcc 10926139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 39134976 - 39134920
Alignment:
Q  481 gcgttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgattt 537  Q
    ||||||||||||||||||| ||||    ||||||||||||||||||||||| |||||    
T  39134976 gcgttccatcaccatcactccatcagattttccttttcttcttccccgatttgattt 39134920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 231111 - 231055
Alignment:
Q  483 gttccatcaccatcacttcatcgtcctttccttttcttcttccccgattcgatttcc 539  Q
    ||||||||| ||||||| ||||   ||||||||||||||||||| |||| |||||||    
T  231111 gttccatcaacatcactccatcagactttccttttcttcttccctgatttgatttcc 231055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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