View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_low_20 (Length: 250)
Name: NF3290_low_20
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 31858288 - 31858521
Alignment:
| Q |
16 |
attgcagagtgagtcgaaatttcaaagtgatattgcaatgagaattctaaattaggattctagtcaagggttatagctctttcgtaaattgcaaaactaa |
115 |
Q |
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| T |
31858288 |
attgcagagtgagtcgaaatttctaagtgatattgcaatgaaaattctaaattagaattctagtcaggggttatagctctttcgtaaattgcaaa-ctaa |
31858386 |
T |
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| Q |
116 |
accaccactttattattctcttttaaggatttgagttaaatgttagtgcaattaaacttagaaacttaatgtttaaggtccaatttatattgagagaaaa |
215 |
Q |
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| T |
31858387 |
accaccactttattattctcttttaaggatttgagttaaatattagtgcaattaaacttagaaacttaatctttaaggtccaatatatattgagagaaaa |
31858486 |
T |
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| Q |
216 |
aattcattatacaacatcaagttcacaaaaataaa |
250 |
Q |
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| T |
31858487 |
aattcattatgcaacatcaagttcacaaaaataaa |
31858521 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 32809836 - 32809994
Alignment:
| Q |
25 |
tgagtcgaaatttcaaagtgatattgcaatgagaatt-ctaaattaggattctagtcaagggttatagctctttcgtaaattgcaaaactaaaccaccac |
123 |
Q |
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| T |
32809836 |
tgagtcaaaatttcaaagtaaaattgcaatgagaaatactaaattgggattctagttaagaaatatgattcttttgtaaattgtagac--aaacctccac |
32809933 |
T |
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| Q |
124 |
tttattattctcttttaaggatttgagttaaatgttagtgcaattaaacttagaaacttaa |
184 |
Q |
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| T |
32809934 |
tttctttttctcttttaaggatttgagttaaggaatagtgcaattaaacctaaaaacttaa |
32809994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 8965758 - 8965679
Alignment:
| Q |
120 |
ccactttattattctcttttaaggatttgagttaaatgttagtgcaattaaacttagaaacttaa-tgtttaaggtccaa |
198 |
Q |
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| T |
8965758 |
ccactttctttttctctattaaggatttgagttaatggatagtgaaattaaacctaaaaacttaagtgtttaaggtccaa |
8965679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 31255765 - 31255806
Alignment:
| Q |
158 |
ttagtgcaattaaacttagaaacttaatgtttaaggtccaat |
199 |
Q |
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| T |
31255765 |
ttagtgtaattaaacctagaaacttaatgtttaaggtccaat |
31255806 |
T |
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