View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3290_low_24 (Length: 212)

Name: NF3290_low_24
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3290_low_24
NF3290_low_24
[»] chr8 (8 HSPs)
chr8 (15-195)||(11815791-11815971)
chr8 (37-78)||(10265864-10265905)
chr8 (21-94)||(14227190-14227263)
chr8 (35-78)||(14943131-14943174)
chr8 (45-94)||(34201064-34201113)
chr8 (35-95)||(7551477-7551536)
chr8 (34-66)||(16494083-16494115)
chr8 (37-93)||(41141650-41141706)
[»] chr7 (12 HSPs)
chr7 (21-108)||(9483353-9483439)
chr7 (22-94)||(29788669-29788741)
chr7 (39-94)||(30516375-30516430)
chr7 (21-94)||(42720908-42720981)
chr7 (40-106)||(3150496-3150562)
chr7 (35-77)||(4909133-4909175)
chr7 (39-69)||(4909856-4909886)
chr7 (39-77)||(39120399-39120437)
chr7 (45-94)||(38134424-38134473)
chr7 (35-92)||(43688282-43688339)
chr7 (42-78)||(927871-927907)
chr7 (33-77)||(31924406-31924450)
[»] chr5 (12 HSPs)
chr5 (22-93)||(9055537-9055608)
chr5 (34-94)||(14817042-14817102)
chr5 (39-94)||(9878050-9878105)
chr5 (44-97)||(16315864-16315917)
chr5 (22-77)||(35053770-35053825)
chr5 (39-78)||(41558717-41558756)
chr5 (44-94)||(32630753-32630803)
chr5 (42-76)||(41542507-41542541)
chr5 (33-78)||(41737053-41737098)
chr5 (34-86)||(8325090-8325142)
chr5 (39-95)||(9449455-9449511)
chr5 (33-93)||(28296308-28296368)
[»] chr1 (11 HSPs)
chr1 (32-97)||(43328446-43328511)
chr1 (15-93)||(47126228-47126306)
chr1 (39-94)||(41500724-41500779)
chr1 (39-94)||(41510902-41510957)
chr1 (53-94)||(45660787-45660828)
chr1 (42-93)||(42981512-42981563)
chr1 (35-77)||(3523373-3523415)
chr1 (15-56)||(11790442-11790483)
chr1 (53-94)||(17080899-17080940)
chr1 (41-78)||(29127272-29127309)
chr1 (40-77)||(39828258-39828295)
[»] chr3 (9 HSPs)
chr3 (39-93)||(7563217-7563271)
chr3 (33-94)||(41319328-41319389)
chr3 (34-77)||(15544674-15544717)
chr3 (39-86)||(29112306-29112353)
chr3 (15-74)||(52066941-52067000)
chr3 (46-91)||(13404898-13404943)
chr3 (44-97)||(41036783-41036836)
chr3 (39-94)||(45289814-45289870)
chr3 (34-78)||(52067077-52067121)
[»] chr6 (9 HSPs)
chr6 (40-93)||(17422274-17422327)
chr6 (42-78)||(7250997-7251033)
chr6 (34-94)||(8623186-8623246)
chr6 (35-77)||(7282290-7282332)
chr6 (17-94)||(10031534-10031611)
chr6 (40-77)||(15443682-15443719)
chr6 (55-91)||(1893390-1893426)
chr6 (53-97)||(4432064-4432107)
chr6 (50-78)||(15109600-15109628)
[»] chr4 (9 HSPs)
chr4 (34-94)||(37496685-37496745)
chr4 (35-78)||(7367535-7367578)
chr4 (39-94)||(43093543-43093598)
chr4 (39-90)||(49982818-49982869)
chr4 (52-133)||(19262904-19262984)
chr4 (124-173)||(19447832-19447881)
chr4 (53-94)||(35212745-35212786)
chr4 (112-169)||(43093451-43093508)
chr4 (40-77)||(43843645-43843682)
[»] chr2 (9 HSPs)
chr2 (17-96)||(18638528-18638609)
chr2 (39-95)||(6736476-6736532)
chr2 (34-105)||(30289791-30289863)
chr2 (44-96)||(33498619-33498671)
chr2 (39-78)||(12464883-12464922)
chr2 (34-77)||(29970584-29970627)
chr2 (35-77)||(43188153-43188195)
chr2 (40-96)||(3103538-3103594)
chr2 (34-94)||(37986760-37986820)
[»] scaffold0024 (1 HSPs)
scaffold0024 (33-94)||(18126-18187)
[»] scaffold0200 (1 HSPs)
scaffold0200 (30-78)||(30452-30500)
[»] scaffold0011 (1 HSPs)
scaffold0011 (34-94)||(240039-240099)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 11815791 - 11815971
Alignment:
Q  15 agcacagacacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaaccaggtgtgtcgaagttaga 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11815791 agcacggacacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaaccaggtgtgtcggagttaga 11815890  T
Q  115 cactaacacatgtcggacaacggacacgccatcaatttgaagtttcggtgctacatagaatataagtcatgtgctgtgtga 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11815891 cactaacacatgtcggacaacggacacgccatcaatttgaagtttcggtgctacatagaatataagtcatgtgctgtgtga 11815971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 10265905 - 10265864
Alignment:
Q  37 acgacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  10265905 acgacactgacacgttgataccaatgataatttgagaaaatg 10265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 14227190 - 14227263
Alignment:
Q  21 gacacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||| | | |||||| |||||||||||  ||||||||||||||||||||||||   |||||| |||||||    
T  14227190 gacacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 14943174 - 14943131
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    ||||||||||||||| ||||||||||||| | ||||||||||||    
T  14943174 acacgacactgacacattgacaccaataaaattttgagaaaatg 14943131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 34201113 - 34201064
Alignment:
Q  45 gacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||| ||||||| ||||||||||||||||||||  |||||| |||||||    
T  34201113 gacacattgacactaataataatttgagaaaatgacataattcaatgtaa 34201064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 7551536 - 7551477
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaac 95  Q
    ||||| |||||||||||||||||  ||||| |||||||||| ||  |||||||||||||||    
T  7551536 acacgtcactgacacgttgacactgataattatttgagaaattg-aataattgaatgtaac 7551477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 16494115 - 16494083
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataa 66  Q
    ||||||||||||||| |||||||||||||||||    
T  16494115 gacacgacactgacatgttgacaccaataataa 16494083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 41141706 - 41141650
Alignment:
Q  37 acgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgta 93  Q
    |||||| |||||| | ||||||||||||||||||| |||||| ||| ||| ||||||    
T  41141706 acgacaatgacacatcgacaccaataataatttgaaaaaatgatatgatttaatgta 41141650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 9483353 - 9483439
Alignment:
Q  21 gacacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaaccaggtgtgtcgaa 108  Q
    |||||||| || |||||||||| | |||| |||||||||||||||||||||||||||   |||||||||||||||||  |||||||||    
T  9483353 gacacagacatcagacacgaca-taacacattgacaccaataataatttgagaaaatagaataattgaatgtaaccatatgtgtcgaa 9483439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 29788741 - 29788669
Alignment:
Q  22 acacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgtt-ataattgaatgtaa 94  Q
    |||||||  ||||||||||||||||||||| |||| |||||||||||||||||| |||| || |||||||||||    
T  29788741 acacagacgttagacacgacactgacacgtcgaca-caataataatttgagaaactgttaattattgaatgtaa 29788669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 30516430 - 30516375
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||||||||| ||||| || ||||||||||||||||| ||||||| |||||||    
T  30516430 gacactgacacgtcgacactaacaataatttgagaaaatgatataattcaatgtaa 30516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 42720981 - 42720908
Alignment:
Q  21 gacacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||| || ||||| ||||||||||||||||||||  ||||||||||| |||||   |||||| |||||||    
T  42720981 gacacagacatcagacatgacactgacacgttgacaccgctaataatttgaaaaaatcacataattaaatgtaa 42720908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 3150562 - 3150496
Alignment:
Q  40 acactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaaccaggtgtgtcg 106  Q
    ||||||||||||||||||| |||||||||| | ||| || ||||| | |||||||||  ||||||||    
T  3150562 acactgacacgttgacaccgataataatttaaaaaattggtataactaaatgtaaccgcgtgtgtcg 3150496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 4909133 - 4909175
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    |||| |||| |||| ||||||||||||||||||||||||||||    
T  4909133 acacaacacggacaggttgacaccaataataatttgagaaaat 4909175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 4909856 - 4909886
Alignment:
Q  39 gacactgacacgttgacaccaataataattt 69  Q
    |||||||||||||||||||||||||||||||    
T  4909856 gacactgacacgttgacaccaataataattt 4909886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 39120437 - 39120399
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaat 77  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  39120437 gacactgacacgttgacactaataataaattgagaaaat 39120399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 38134473 - 38134424
Alignment:
Q  45 gacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||| ||||||||| |||||||||||||||||||  |||||| |||||||    
T  38134473 gacatgttgacaccgataataatttgagaaaatgacataattcaatgtaa 38134424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 43688282 - 43688339
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgt 92  Q
    ||||||||||||||||| ||||||||  |||| |||| |||||| ||| |||||||||    
T  43688282 acacgacactgacacgtcgacaccaactataacttgaaaaaatgatatgattgaatgt 43688339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 927907 - 927871
Alignment:
Q  42 actgacacgttgacaccaataataatttgagaaaatg 78  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  927907 actgacacgtcgacactaataataatttgagaaaatg 927871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 31924406 - 31924450
Alignment:
Q  33 agacacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    |||||||| | ||||||||||||||| |||||||||| |||||||    
T  31924406 agacacgaaattgacacgttgacaccgataataatttaagaaaat 31924450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 9055537 - 9055608
Alignment:
Q  22 acacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgta 93  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||||||| ||||||  ||||| |||||||    
T  9055537 acacagacattagacacggcactgacacgttgacaccaatagtaatttgaaaaaatggcataatagaatgta 9055608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 14817042 - 14817102
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||| |||||| || ||||||||| |||||||||||||||||||||| ||| |||||||    
T  14817042 gacacggcactgatacattgacaccagtaataatttgagaaaatgttattatttaatgtaa 14817102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 9878105 - 9878050
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||||||||| |||||||||||||||||||||| |||   |||||||||||||    
T  9878105 gacactgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaa 9878050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 16315864 - 16315917
Alignment:
Q  44 tgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacca 97  Q
    ||||| ||||||||  ||||||||||||| ||||| ||||||||||||||||||    
T  16315864 tgacatgttgacactgataataatttgaggaaatgatataattgaatgtaacca 16315917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 35053825 - 35053770
Alignment:
Q  22 acacagatattagacacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    ||||| |||| |||||||||||||||||||||||| | |||||||| ||| |||||    
T  35053825 acacatatatcagacacgacactgacacgttgacatctataataatctgacaaaat 35053770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 41558756 - 41558717
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  41558756 gacactgacacattgacacaaataataatttgagaaaatg 41558717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 32630803 - 32630753
Alignment:
Q  44 tgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||| |||||||    
T  32630803 tgacacgctgacaccgataataatttgagaaaattatataattcaatgtaa 32630753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 41542541 - 41542507
Alignment:
Q  42 actgacacgttgacaccaataataatttgagaaaa 76  Q
    ||||||||||||||||| |||||||||||||||||    
T  41542541 actgacacgttgacaccgataataatttgagaaaa 41542507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 41737053 - 41737098
Alignment:
Q  33 agacacgacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||    
T  41737053 agacacgacactgacacgttgacacctctcgtaatttgagaaaatg 41737098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 8325142 - 8325090
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataatt 86  Q
    |||||| ||||||||||| ||||||  | |||||||||||||||| |||||||    
T  8325142 gacacggcactgacacgtcgacaccggtcataatttgagaaaatgatataatt 8325090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 9449455 - 9449511
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaac 95  Q
    ||||||| ||||  |||||||||||||||||||||||||   |||||| ||||||||    
T  9449455 gacactggcacgccgacaccaataataatttgagaaaatcacataattcaatgtaac 9449511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 28296308 - 28296368
Alignment:
Q  33 agacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgta 93  Q
    ||||||||||  |||| || |||||| |||||||||||||||||||  |||||| ||||||    
T  28296308 agacacgacatggacaagtcgacaccgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 43328446 - 43328511
Alignment:
Q  32 tagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacca 97  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||  |||||| ||||||||||    
T  43328446 tagacacaacactgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaacca 43328511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 47126228 - 47126306
Alignment:
Q  15 agcacagacacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgta 93  Q
    ||||| |||||||| | | ||||||||||| ||| | |||||||||||||||||| ||||||||  |||||||||||||    
T  47126228 agcacggacacagacacttgacacgacacttacatgatgacaccaataataatttaagaaaatgaaataattgaatgta 47126306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 41500779 - 41500724
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||||| |||||||||| || |||||| |||||||| |||||||||||||||    
T  41500779 gacactgacatgttgacaccactagtaatttaagaaaatgatataattgaatgtaa 41500724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 41510957 - 41510902
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||||| |||||||||| || |||||| |||||||| |||||||||||||||    
T  41510957 gacactgacatgttgacaccactagtaatttaagaaaatgatataattgaatgtaa 41510902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 45660828 - 45660787
Alignment:
Q  53 gacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  45660828 gacaccaataataatttgagaatatgtcataattgaatgtaa 45660787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 42981563 - 42981512
Alignment:
Q  42 actgacacgttgacaccaataataatttgagaaaatgttataattgaatgta 93  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||||||    
T  42981563 actgacacgttgacacatataatgatttgagaaaatggaataattgaatgta 42981512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 3523373 - 3523415
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    ||||||||||||||||| |||||| |||||||||||| |||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaat 3523415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 11790442 - 11790483
Alignment:
Q  15 agcacagacacagatattagacacgacactgacacgttgaca 56  Q
    ||||| |||||||||||||||||||||||| |||||| ||||    
T  11790442 agcactgacacagatattagacacgacactaacacgtagaca 11790483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 17080940 - 17080899
Alignment:
Q  53 gacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||||||||||||||||||||   ||||||||||||||    
T  17080940 gacaccaataataatttgagaaaataacataattgaatgtaa 17080899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 29127272 - 29127309
Alignment:
Q  41 cactgacacgttgacaccaataataatttgagaaaatg 78  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  29127272 cactgacacgttgacaccgataatcatttgagaaaatg 29127309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 39828258 - 39828295
Alignment:
Q  40 acactgacacgttgacaccaataataatttgagaaaat 77  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  39828258 acacggacacgtcgacaccaataataatttgagaaaat 39828295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 7563271 - 7563217
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgta 93  Q
    |||||||| ||||||||||||||||||||||||||| |||  |||||||||||||    
T  7563271 gacactgatacgttgacaccaataataatttgagaatatggaataattgaatgta 7563217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 41319389 - 41319328
Alignment:
Q  33 agacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||||  |||||| |||||||    
T  41319389 agacacgacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaa 41319328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 15544674 - 15544717
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    |||||||||||||||||||||||||  ||||||||||| |||||    
T  15544674 gacacgacactgacacgttgacaccgctaataatttgataaaat 15544717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 29112353 - 29112306
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataatt 86  Q
    ||||||||||||||||||||| |||| ||||||||||||  |||||||    
T  29112353 gacactgacacgttgacaccactaattatttgagaaaatcatataatt 29112306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 52066941 - 52067000
Alignment:
Q  15 agcacagacacagatattagacacgacactgacacgttgacaccaataataatttgagaa 74  Q
    ||||| |||||||| || |||||| ||||| |||||| ||||||||||||||||| ||||    
T  52066941 agcaccgacacagaaatcagacacaacactcacacgtcgacaccaataataatttaagaa 52067000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 13404943 - 13404898
Alignment:
Q  46 acacgttgacaccaataataatttgagaaaatgttataattgaatg 91  Q
    ||||||||||| |||||||||||||||||||||  | |||||||||    
T  13404943 acacgttgacatcaataataatttgagaaaatgaaacaattgaatg 13404898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 41036836 - 41036783
Alignment:
Q  44 tgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacca 97  Q
    |||||| |||||||   |||||||||||||||||| |||| |||||||||||||    
T  41036836 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaacca 41036783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 45289814 - 45289870
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgag-aaaatgttataattgaatgtaa 94  Q
    ||||| ||||| | |||| ||||||||||||||| |||||| |||||||||||||||    
T  45289814 gacacagacacatcgacaacaataataatttgagaaaaatgatataattgaatgtaa 45289870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 52067077 - 52067121
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    ||||| |||||||||||| || |||||||||||||| ||||||||    
T  52067077 gacacaacactgacacgtcgataccaataataatttaagaaaatg 52067121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 17422327 - 17422274
Alignment:
Q  40 acactgacacgttgacaccaataataatttgagaaaatgttataattgaatgta 93  Q
    ||||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  17422327 acactaacacgtcgacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 7251033 - 7250997
Alignment:
Q  42 actgacacgttgacaccaataataatttgagaaaatg 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  7251033 actgacacgttgacaccaataataatttgagaaaatg 7250997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 8623186 - 8623246
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||  || |||||||||||    
T  8623186 gacacgacactgacacgttgacaccgataacaattttagaaaatgacatcattgaatgtaa 8623246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 7282290 - 7282332
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    ||||||||||||||| |||||||| |||||||||||| |||||    
T  7282290 acacgacactgacacattgacaccgataataatttgaaaaaat 7282332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 10031534 - 10031611
Alignment:
Q  17 cacagacacagatattagacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||||| ||||  ||||| |||||  ||||||||||||| |||| | ||||||||||||  |||||| |||||||    
T  10031534 cacagacacggataccagacatgacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaa 10031611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 15443682 - 15443719
Alignment:
Q  40 acactgacacgttgacaccaataataatttgagaaaat 77  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  15443682 acactgacacgtcgacatcaataataatttgagaaaat 15443719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 1893426 - 1893390
Alignment:
Q  55 caccaataataatttgagaaaatgttataattgaatg 91  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  1893426 caccaataataatttgagaaaatgatataattcaatg 1893390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 4432107 - 4432064
Alignment:
Q  53 gacaccaataataatttgagaaaatgttataattgaatgtaacca 97  Q
    |||||||||||||||||||| |||||  |||||||||||||||||    
T  4432107 gacaccaataataatttgag-aaatggaataattgaatgtaacca 4432064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 15109628 - 15109600
Alignment:
Q  50 gttgacaccaataataatttgagaaaatg 78  Q
    |||||||||||||||||||||||||||||    
T  15109628 gttgacaccaataataatttgagaaaatg 15109600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 37496685 - 37496745
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||  |||||| |||||||    
T  37496685 gacacgacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaa 37496745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 7367535 - 7367578
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    |||||||||| |||| | ||||||||||||||||||||||||||    
T  7367535 acacgacactaacacatagacaccaataataatttgagaaaatg 7367578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 43093598 - 43093543
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||||||||  ||||| |||||||||||| ||||||  ||||||||||||||    
T  43093598 gacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaa 43093543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 49982869 - 49982818
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaat 90  Q
    ||||||||||| | || |||| |||||||||||||||||| |||||||||||    
T  49982869 gacactgacacatcgaaaccagtaataatttgagaaaatggtataattgaat 49982818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 19262984 - 19262904
Alignment:
Q  52 tgacaccaataataatttgagaaaatgttataattgaatgtaaccaggtgtgtcgaagttagacactaacacatgtcggaca 133  Q
    |||||||| |||||||||||||| |||  |||||||||||||| ||  |||||| | ||| |||||  ||||||||||||||    
T  19262984 tgacaccagtaataatttgagaagatgacataattgaatgtaatcacatgtgtcaatgtt-gacaccgacacatgtcggaca 19262904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 19447881 - 19447832
Alignment:
Q  124 atgtcggacaacggacacgccatcaatttgaagtttcggtgctacataga 173  Q
    |||||||||| || ||||||||||||| ||||||||| ||||| ||||||    
T  19447881 atgtcggacaccgaacacgccatcaatgtgaagtttcagtgctgcataga 19447832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 35212786 - 35212745
Alignment:
Q  53 gacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||||||||||||||||||||   ||||||||||||||    
T  35212786 gacaccaataataatttgagaaaattaaataattgaatgtaa 35212745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 43093508 - 43093451
Alignment:
Q  112 agacactaacacatgtcggacaacggacacgccatcaatttgaagtttcggtgctaca 169  Q
    |||||||||||||||||||||| |||||||| | || ||| ||||| | |||||||||    
T  43093508 agacactaacacatgtcggacatcggacacgacttctattagaagtgttggtgctaca 43093451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 43843682 - 43843645
Alignment:
Q  40 acactgacacgttgacaccaataataatttgagaaaat 77  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaat 43843645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 18638528 - 18638609
Alignment:
Q  17 cacagacacagatattagacacgacactgacacgttgacaccaataata--atttgagaaaatgttataattgaatgtaacc 96  Q
    |||||||||| ||| | ||||||||||||||| || |||||||||||||   |||||||||||| ||||| | |||||||||    
T  18638528 cacagacacaaatactggacacgacactgacatgtcgacaccaataatattttttgagaaaatggtataagtaaatgtaacc 18638609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 6736476 - 6736532
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaac 95  Q
    ||||||||||||| ||||||  |||||||||||||| |||  |||||||||||||||    
T  6736476 gacactgacacgtcgacaccggtaataatttgagaatatggaataattgaatgtaac 6736532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 30289791 - 30289863
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatgtta-taattgaatgtaaccaggtgtgtc 105  Q
    ||||||||||||||| || |||||   ||||||||| ||||||||| | |||||||||||||||| |||||||    
T  30289791 gacacgacactgacatgtagacactggtaataatttaagaaaatgtgagtaattgaatgtaaccatgtgtgtc 30289863  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 33498619 - 33498671
Alignment:
Q  44 tgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacc 96  Q
    |||||||| ||||| | ||||||||||||||||||  ||||||||||||||||    
T  33498619 tgacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaacc 33498671  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 12464922 - 12464883
Alignment:
Q  39 gacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  12464922 gacactgacacgccgacaccaataataatttgagaaaatg 12464883  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 29970627 - 29970584
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    |||||||||||||||| ||||||||  |||||||||||||||||    
T  29970627 gacacgacactgacacattgacaccgctaataatttgagaaaat 29970584  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 43188153 - 43188195
Alignment:
Q  35 acacgacactgacacgttgacaccaataataatttgagaaaat 77  Q
    |||||||||||||||||  ||||||||||||| ||||||||||    
T  43188153 acacgacactgacacgtcaacaccaataataacttgagaaaat 43188195  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 3103594 - 3103538
Alignment:
Q  40 acactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacc 96  Q
    |||||||||||| ||||  | |||||||||||||||||   ||||||||||||||||    
T  3103594 acactgacacgtggacattagtaataatttgagaaaataagataattgaatgtaacc 3103538  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 37986760 - 37986820
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||||||||||||||||  |||||  |||||||||||| |||||| |||| |||| |||||    
T  37986760 gacacgacactgacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaa 37986820  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 18187 - 18126
Alignment:
Q  33 agacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    ||||||||||||||||||| |||||| |||| | |||||||||||   |||||| |||||||    
T  18187 agacacgacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaa 18126  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 30500 - 30452
Alignment:
Q  30 attagacacgacactgacacgttgacaccaataataatttgagaaaatg 78  Q
    |||||||| | ||||||||||| ||||| |||||||| |||||||||||    
T  30500 attagacatgtcactgacacgtagacactaataataacttgagaaaatg 30452  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 240099 - 240039
Alignment:
Q  34 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 94  Q
    |||| ||||| |||| ||||||| | ||||||||||||||||||  ||||||| |||||||    
T  240099 gacatgacacggacatgttgacaactataataatttgagaaaataatataattcaatgtaa 240039  T

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