View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_low_4 (Length: 465)
Name: NF3290_low_4
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 164 - 454
Target Start/End: Complemental strand, 3664094 - 3663805
Alignment:
| Q |
164 |
agtagagctctaagagcttttgaggtgttctaagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttg |
263 |
Q |
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| T |
3664094 |
agtagatctctaagagcttttgaggtgttctaagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttg |
3663995 |
T |
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| Q |
264 |
tcacgattttgaggaaaatttgacaatgtcatatttgctttattttgtggcgagaaaggaacaaatcgtgacacaatttggagagcattaattctaaaat |
363 |
Q |
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| T |
3663994 |
ccacgattttgaggaaaatttgacaatgtca-atttgctttattttgtggcgagaaaggaacaaatcatgacacaatttggagagcattaattctaaaat |
3663896 |
T |
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| Q |
364 |
ttgaaagttaaagagaaattgagacacgatttagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaacttcat |
454 |
Q |
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| T |
3663895 |
ttgaaagttaaagagaaatcaaggcacgatttagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaacttcat |
3663805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 3664462 - 3664317
Alignment:
| Q |
18 |
ttattaattacaactttcttaggaaccatgtgtgtcgaccaaatcatgagaattaagaaggtaccnnnnnnnaaaaattgatttccaaactttctattga |
117 |
Q |
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| T |
3664462 |
ttattaattacaactttcttaggaaccatgtgtgtcgaccaaataatgagaattaagaaggcacctttttttaaaa-ttgatttccagactt-ctattga |
3664365 |
T |
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| Q |
118 |
tggcattatgtcatatgatgtttagttagttattttcatgttatttag |
165 |
Q |
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| T |
3664364 |
tggcattatgtcatatgatgtttagttagttattttcatgttatttag |
3664317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 451
Target Start/End: Original strand, 5819887 - 5820163
Alignment:
| Q |
175 |
aagagcttttgaggtgtt-ctaagttggaaaagacaaaattcaagaatcaagcaaaactaaaaatcgtgccacaaaaatggtacatcttgtcacgatttt |
273 |
Q |
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| T |
5819887 |
aagaggttttaaggtgtttctaaattggaaaagactacattcaagaatcaagaaagactaaaaattatgccacaaaaatgctacatcgtgtcacaattct |
5819986 |
T |
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| Q |
274 |
gaggaaaatttgacaatgtcatatttgctttattttgtggcgagaaaggaacaaatcgtgacacaatttggagagcattaattctaaaatttgaaagtta |
373 |
Q |
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| T |
5819987 |
aaggaaaaatggagcttttca-attcacattattttgtggtccgaaaagagaaaatcatgacacgaatcgaagagcgtcaaatctgaaatttgaaatttg |
5820085 |
T |
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| Q |
374 |
aagagaaattgagacacgatttagcaaattgggacatgatttttacgttatataatgagatctataaaaggccaactt |
451 |
Q |
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| T |
5820086 |
atgagaaatagggacacaatttatcaaatcgggagacgattttaacgttacatattgagatccataaaaacccaactt |
5820163 |
T |
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