View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3290_low_6 (Length: 463)

Name: NF3290_low_6
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3290_low_6
NF3290_low_6
[»] chr5 (11 HSPs)
chr5 (13-447)||(18052584-18053016)
chr5 (15-155)||(18047603-18047743)
chr5 (25-159)||(18034916-18035050)
chr5 (342-447)||(18048000-18048105)
chr5 (25-168)||(18029119-18029262)
chr5 (258-447)||(18029570-18029759)
chr5 (201-237)||(237849-237885)
chr5 (209-237)||(14479758-14479786)
chr5 (201-237)||(19128757-19128793)
chr5 (201-237)||(19359691-19359727)
chr5 (201-237)||(28705907-28705943)
[»] chr6 (3 HSPs)
chr6 (201-237)||(505524-505560)
chr6 (201-237)||(10171263-10171299)
chr6 (201-237)||(19310988-19311024)
[»] chr1 (3 HSPs)
chr1 (201-238)||(28182101-28182138)
chr1 (201-237)||(7406232-7406268)
chr1 (201-237)||(8987777-8987813)
[»] scaffold0504 (1 HSPs)
scaffold0504 (201-237)||(5408-5444)
[»] scaffold0418 (1 HSPs)
scaffold0418 (201-237)||(6913-6949)
[»] scaffold0176 (1 HSPs)
scaffold0176 (201-237)||(26579-26615)
[»] chr8 (4 HSPs)
chr8 (201-237)||(3165150-3165186)
chr8 (209-237)||(3417345-3417373)
chr8 (201-237)||(27442169-27442205)
chr8 (201-237)||(41974628-41974664)
[»] chr7 (3 HSPs)
chr7 (209-237)||(36378799-36378827)
chr7 (201-237)||(45099922-45099958)
chr7 (201-237)||(47171435-47171471)
[»] chr4 (4 HSPs)
chr4 (201-237)||(7841532-7841568)
chr4 (201-237)||(19080373-19080409)
chr4 (201-237)||(31329746-31329782)
chr4 (201-237)||(40495083-40495119)
[»] chr3 (3 HSPs)
chr3 (201-237)||(13477045-13477081)
chr3 (209-237)||(41458846-41458874)
chr3 (201-237)||(48648191-48648227)
[»] chr2 (2 HSPs)
chr2 (201-237)||(22301182-22301218)
chr2 (201-237)||(29559448-29559484)


Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 18052584 - 18053016
Alignment:
Q  13 aatattaaaatatggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18052584 aatattaaaatatggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaaga 18052683  T
Q  113 aaaaactgaaccttcttcaaatgcttaaggacgcaggtaacaagacatgattttgatccatctggtgacttaaaaaacactcacacacacacctgctgtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  18052684 aaaaactgaaccttcttcaaatgcttaaggacgcaggtaacaagacatgattttgatccatctggtgacttaaaaaacactcaca--cacacctgctctc 18052781  T
Q  213 aacagatcctgactcatatatatatttttgcaaattaattatttttaatcatttgaatgtaatgaatttcaggatttgaaccaaatgatcaattttacga 312  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18052782 aacggatcctgactcatatatatatttttgcaaattaattatttttaatcatttgaatgtaatgaatttcaggatttgaaccaaatgatcaattttacga 18052881  T
Q  313 cataggaaaccctttaagcattatagaagaagctacagggtttctcccaggaatggaatgtaatagagattcagcaggtaacgatcaggttttaaaagtt 412  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18052882 cataggaaaccctttaagcattatagaagacgctacagggtttctcccaggaatggaatgtaatagagattcagcaggtaacgatcaggttttaaaagtt 18052981  T
Q  413 tacatgtgcgtggatatttctgggtcaaatttcat 447  Q
    |||||||||||||||||||||||||||||||||||    
T  18052982 tacatgtgcgtggatatttctgggtcaaatttcat 18053016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 18047603 - 18047743
Alignment:
Q  15 tattaaaatatggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaa 114  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  18047603 tattaaactatggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaactcaagaaa 18047702  T
Q  115 aaactgaaccttcttcaaatgcttaaggacgcaggtaacaa 155  Q
    ||| ||||| |  ||||||| ||| || |||||||||||||    
T  18047703 aaattgaacatcattcaaatccttgagaacgcaggtaacaa 18047743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 18034916 - 18035050
Alignment:
Q  25 tggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaacc 124  Q
    |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  18034916 tggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacagctctcaaactcaagaaaaaatcgaatc 18035015  T
Q  125 ttcttcaaatgcttaaggacgcaggtaacaagaca 159  Q
    |||| || || |||||| | |||||||||||||||    
T  18035016 ttctccagatccttaagaatgcaggtaacaagaca 18035050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 342 - 447
Target Start/End: Original strand, 18048000 - 18048105
Alignment:
Q  342 aagctacagggtttctcccaggaatggaatgtaatagagattcagcaggtaacgatcaggttttaaaagtttacatgtgcgtggatatttctgggtcaaa 441  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||| |  |||   |||| ||||||||||||||||||| ||||||| ||||||||||||    
T  18048000 aagctacagggtttctcccaggaatagtatgtaatagagatccaggacttaaaagtcagcttttaaaagtttacatgtgtgtggatacttctgggtcaaa 18048099  T
Q  442 tttcat 447  Q
    ||||||    
T  18048100 tttcat 18048105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 18029119 - 18029262
Alignment:
Q  25 tggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaacc 124  Q
    |||||||||||||||  ||||||||| |||||| |||||||| |||||  ||||||||| |||||| |||| ||||| ||||| ||| | |||   ||||    
T  18029119 tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaacttaaggagaaagcaaacc 18029218  T
Q  125 ttcttcaaatgcttaaggacgcaggtaacaagacatgattttga 168  Q
    | ||||| |  || | | | ||||||||||||||||||||||||    
T  18029219 tccttcagagcctcacgaatgcaggtaacaagacatgattttga 18029262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 447
Target Start/End: Original strand, 18029570 - 18029759
Alignment:
Q  258 taatcatttgaatgtaatgaatttcaggatttgaaccaaatgatcaattttacgacataggaaaccctttaagcattatagaagaagctacagggtttct 357  Q
    |||||||||||  | |||||||||||||  |||||||||||||| ||||||||  ||||| ||||   | |     |||| |||| | |||||| |||      
T  18029570 taatcatttgatgggaatgaatttcagggattgaaccaaatgatgaattttacagcatagaaaacatctcagaggctataaaagagggtacaggatttac 18029669  T
Q  358 cccaggaatggaatgtaatagagattcagcaggtaacgatcaggttttaaaagtttacatgtgcgtggatatttctgggtcaaatttcat 447  Q
    ||||||||| ||||||||||||||||||||| |||||   ||  |||   ||||||||||||| ||||| | ||||||||||||||||||    
T  18029670 cccaggaatagaatgtaatagagattcagcacgtaacagccaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcat 18029759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 237849 - 237885
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  237849 acacctggtgtcaacggatcctgactcatatatatat 237885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 14479758 - 14479786
Alignment:
Q  209 tgtcaacagatcctgactcatatatatat 237  Q
    |||||||||||||||||||||||||||||    
T  14479758 tgtcaacagatcctgactcatatatatat 14479786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 19128793 - 19128757
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  19128793 acacctggtgtcaacggatcctgactcatatatatat 19128757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 19359727 - 19359691
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  19359727 acacctggtgtcaacggatcctgactcatatatatat 19359691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 28705907 - 28705943
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  28705907 acacctggtgtcaacggatcctgactcatatatatat 28705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 505560 - 505524
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| |||||||||||||||||||||||||||||    
T  505560 acacctgatgtcaacagatcctgactcatatatatat 505524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 10171299 - 10171263
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  10171299 acacctggtgtcaacggatcctgactcatatatatat 10171263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 19311024 - 19310988
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  19311024 acacctggtgtcaacggatcctgactcatatatatat 19310988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 28182101 - 28182138
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatatt 238  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  28182101 acacctggtgtcaacagatcctcactcatatatatatt 28182138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 7406268 - 7406232
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  7406268 acacctggtgtcaacggatcctgactcatatatatat 7406232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 8987813 - 8987777
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  8987813 acacctgatgtcaaccgatcctgactcatatatatat 8987777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 5408 - 5444
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  5408 acacctggtgtcaacggatcctgactcatatatatat 5444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 6913 - 6949
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6913 acacctggtgtcaacggatcctgactcatatatatat 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 26615 - 26579
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  26615 acacctggtgtcaacggatcctgactcatatatatat 26579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 3165150 - 3165186
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  3165150 acacctgatgtcaacggatcctgactcatatatatat 3165186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 3417373 - 3417345
Alignment:
Q  209 tgtcaacagatcctgactcatatatatat 237  Q
    |||||||||||||||||||||||||||||    
T  3417373 tgtcaacagatcctgactcatatatatat 3417345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 27442169 - 27442205
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  27442169 acacctggtgtcaacggatcctgactcatatatatat 27442205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 41974664 - 41974628
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  41974664 acacctggtgtcaacggatcctgactcatatatatat 41974628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 36378827 - 36378799
Alignment:
Q  209 tgtcaacagatcctgactcatatatatat 237  Q
    |||||||||||||||||||||||||||||    
T  36378827 tgtcaacagatcctgactcatatatatat 36378799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 45099922 - 45099958
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  45099922 acacctggtgtcaacggatcctgactcatatatatat 45099958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 47171435 - 47171471
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  47171435 acacctggtgtcaacggatcctgactcatatatatat 47171471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 7841568 - 7841532
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  7841568 acacctgatgtcaacggatcctgactcatatatatat 7841532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 19080409 - 19080373
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19080409 acacctggtgtcaacagatcctgtctcatatatatat 19080373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 31329746 - 31329782
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  31329746 acacctggtgtcaacggatcctgactcatatatatat 31329782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 40495119 - 40495083
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  40495119 acacctggtgtcaacggatcctgactcatatatatat 40495083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 13477081 - 13477045
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  13477081 acacctggtgtcaacggatcctgactcatatatatat 13477045  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 41458846 - 41458874
Alignment:
Q  209 tgtcaacagatcctgactcatatatatat 237  Q
    |||||||||||||||||||||||||||||    
T  41458846 tgtcaacagatcctgactcatatatatat 41458874  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 48648227 - 48648191
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  48648227 acacctggtgtcaacggatcctgactcatatatatat 48648191  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 22301218 - 22301182
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  22301218 acacctggtgtcaacggatcctgactcatatatatat 22301182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 29559448 - 29559484
Alignment:
Q  201 acacctgctgtcaacagatcctgactcatatatatat 237  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  29559448 acacctggtgtcaacagatcctaactcatatatatat 29559484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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