View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3290_low_7 (Length: 440)
Name: NF3290_low_7
Description: NF3290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3290_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 103 - 440
Target Start/End: Original strand, 35609967 - 35610305
Alignment:
| Q |
103 |
ggggagtgtatagattgcaaatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttgg-ttgcctagatatgggaacactagattc |
201 |
Q |
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| T |
35609967 |
ggggagtgtatagattgcaaatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttgggttgcctagaaatgggaacactagattc |
35610066 |
T |
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| Q |
202 |
actgacctaaatggagagatcatatatcatttcatgtttatttcaagtttcagtgagtatactgtggttgacattgccaatgtactaaagattgatccac |
301 |
Q |
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| T |
35610067 |
actgacctaaacggagagatcatatatcatttcatgtttatttcaagtttcagtgagtataccgtggttgacattgccaatgtactaaagattgatccac |
35610166 |
T |
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| Q |
302 |
aaatccctcctgatagggcctgccttctcggttgtggtgtatcgacaggtagtttctttatcaacgcaaaaagtaaatttagaatatagataagaacaat |
401 |
Q |
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| T |
35610167 |
aaatccctcctcatagggcctgccttctcggttgtggtgtatcgacaggtagtttctttatcaacgcaaaaagtaaatttagaatatagataagaacaat |
35610266 |
T |
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| Q |
402 |
gatggtggtcaattagggtcgaattaattggtcgtgaat |
440 |
Q |
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| T |
35610267 |
gatgatggtcaattagggtcaacttaattggtcgtgaat |
35610305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 35614374 - 35614664
Alignment:
| Q |
21 |
tagggttgtggaaagtgtagggaaggatgtaactgaagtaacaaaaggagatatggttattccaattttcctaccagattgtggggagtgtatagattgc |
120 |
Q |
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| T |
35614374 |
tagggttgtggaaagtgttgggaagaatgtaactgaagttacaaaaggagatgtggttattccaatttttctaccagattgtggagagtgtatagattgc |
35614473 |
T |
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| Q |
121 |
aaatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttggttgcctagatatgggaacactagattcactgacctaaatggagaga |
220 |
Q |
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| T |
35614474 |
aaatcaaccaagagcaacctttgtactaatttcccgttcaaagtttctccttggatgcctagacatgagaacaccagattcacagacctaaacggagaga |
35614573 |
T |
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| Q |
221 |
tcatatatcatttcatgtttatttcaagtttcagtgagtatactgtggttgaca-ttgccaatgtactaaagattgatccacaaatccctcc |
311 |
Q |
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| T |
35614574 |
tcatacatcatttcatgtatgtttcaagtttcagcgagtacactgtgg-tgacatttgccaatgtaacaaagattgacccagaaattcctcc |
35614664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 38029232 - 38028902
Alignment:
| Q |
22 |
agggttgtggaaagtgtagggaaggatgtaactgaagtaacaaaaggagatatggttattccaattttcctaccagattgtggggagtgtatagattgca |
121 |
Q |
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| T |
38029232 |
agggttgtggaaagtgttggagagggagtaacagaagttacaaaaggagacattgttatcccaatcttcatggctgattgtgaagagtgcatagattgca |
38029133 |
T |
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| Q |
122 |
aatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttggttgcctagatatgggaacactagattcactgacctaaatggagagat |
221 |
Q |
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| T |
38029132 |
aatcaacaaagagcaacctttgttcaaagtttccttttgatgttaaaccttggatgcttagatatgataccaccagattcactaatctaaatggagagat |
38029033 |
T |
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| Q |
222 |
catatatcatttcatgtttatttcaagtttcagtgagtatactgtggttgacattgccaatgtactaaagattgatccacaaatccctcctgatagggcc |
321 |
Q |
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| T |
38029032 |
tataaaccatttcatatttgtctcgagttttagcgagtacactgtggttgacactgccaatctactcaagattgatccagcaattcctcccaacagggca |
38028933 |
T |
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| Q |
322 |
tgccttctcggttgtggtgtatcgacaggta |
352 |
Q |
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| T |
38028932 |
tgcctcctcagttgtggtgtatcaacaggta |
38028902 |
T |
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