View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291-Insertion-1 (Length: 1073)

Name: NF3291-Insertion-1
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291-Insertion-1
NF3291-Insertion-1
[»] chr4 (30 HSPs)
chr4 (8-1052)||(55091753-55092811)
chr4 (653-720)||(37624674-37624741)
chr4 (655-720)||(21864357-21864422)
chr4 (655-720)||(21920218-21920283)
chr4 (652-716)||(4505458-4505522)
chr4 (652-716)||(7905967-7906031)
chr4 (652-716)||(25231297-25231361)
chr4 (656-716)||(36558264-36558324)
chr4 (652-716)||(51733465-51733529)
chr4 (652-715)||(22220330-22220393)
chr4 (652-715)||(52915513-52915576)
chr4 (784-901)||(22220448-22220565)
chr4 (816-864)||(24940868-24940917)
chr4 (654-719)||(28308845-28308910)
chr4 (816-863)||(27943665-27943712)
chr4 (837-898)||(56556391-56556455)
chr4 (810-863)||(20448030-20448083)
chr4 (789-864)||(40345441-40345514)
chr4 (783-898)||(4505291-4505406)
chr4 (789-863)||(45043682-45043754)
chr4 (817-852)||(47306264-47306299)
chr4 (789-863)||(52848148-52848220)
chr4 (818-864)||(1868217-1868263)
chr4 (640-674)||(30106410-30106444)
chr4 (789-863)||(30261250-30261322)
chr4 (817-882)||(47305265-47305331)
chr4 (822-863)||(22089172-22089213)
chr4 (655-716)||(43337721-43337782)
chr4 (822-888)||(50072242-50072310)
chr4 (787-863)||(54042275-54042349)
[»] chr1 (26 HSPs)
chr1 (652-716)||(14593310-14593374)
chr1 (654-720)||(30293454-30293520)
chr1 (652-715)||(52023938-52024001)
chr1 (620-716)||(50249432-50249529)
chr1 (652-716)||(12591047-12591111)
chr1 (652-720)||(44257646-44257714)
chr1 (652-715)||(34047198-34047261)
chr1 (652-716)||(14373378-14373442)
chr1 (652-716)||(34032045-34032109)
chr1 (652-714)||(26352046-26352108)
chr1 (652-716)||(27721080-27721144)
chr1 (652-716)||(27721195-27721259)
chr1 (821-898)||(30685480-30685559)
chr1 (821-901)||(11065957-11066039)
chr1 (816-863)||(33622478-33622525)
chr1 (810-864)||(38531404-38531458)
chr1 (620-725)||(8565877-8565981)
chr1 (789-863)||(15573598-15573674)
chr1 (784-901)||(34032163-34032280)
chr1 (832-900)||(43929636-43929707)
chr1 (816-863)||(29567887-29567934)
chr1 (816-863)||(48025367-48025414)
chr1 (784-899)||(50249263-50249378)
chr1 (652-714)||(12484593-12484655)
chr1 (821-863)||(31491888-31491930)
chr1 (784-864)||(52024317-52024395)
[»] chr8 (22 HSPs)
chr8 (652-716)||(396181-396245)
chr8 (652-716)||(15160413-15160477)
chr8 (787-901)||(43084715-43084827)
chr8 (652-720)||(17656025-17656093)
chr8 (652-716)||(39765827-39765891)
chr8 (816-898)||(35356263-35356345)
chr8 (810-863)||(45359003-45359056)
chr8 (652-716)||(37559500-37559564)
chr8 (786-863)||(6374405-6374480)
chr8 (654-716)||(40362557-40362619)
chr8 (818-888)||(7129265-7129337)
chr8 (816-894)||(39765974-39766054)
chr8 (816-863)||(7839449-7839496)
chr8 (837-899)||(27416455-27416518)
chr8 (816-863)||(40228565-40228612)
chr8 (810-888)||(514840-514918)
chr8 (837-898)||(11335797-11335859)
chr8 (620-720)||(12339842-12339941)
chr8 (784-849)||(36921362-36921425)
chr8 (816-895)||(40362392-40362473)
chr8 (662-716)||(43724504-43724558)
chr8 (784-900)||(43724334-43724450)
[»] chr7 (37 HSPs)
chr7 (652-716)||(31883906-31883970)
chr7 (652-716)||(2297165-2297229)
chr7 (652-716)||(6747348-6747412)
chr7 (652-716)||(12977651-12977715)
chr7 (652-716)||(12983109-12983173)
chr7 (652-716)||(18270700-18270764)
chr7 (652-716)||(18292457-18292521)
chr7 (652-716)||(37502441-37502505)
chr7 (654-715)||(715830-715891)
chr7 (624-716)||(42286030-42286123)
chr7 (652-715)||(25440995-25441058)
chr7 (652-716)||(44567007-44567070)
chr7 (653-716)||(34274916-34274979)
chr7 (653-720)||(47187780-47187847)
chr7 (816-898)||(22297952-22298034)
chr7 (784-864)||(715946-716024)
chr7 (833-901)||(1103435-1103506)
chr7 (787-863)||(37490775-37490849)
chr7 (784-863)||(12977769-12977846)
chr7 (817-888)||(36447186-36447258)
chr7 (821-898)||(40799945-40800024)
chr7 (816-863)||(2297029-2297076)
chr7 (818-898)||(17869192-17869274)
chr7 (816-863)||(18292326-18292373)
chr7 (789-863)||(29531023-29531095)
chr7 (654-716)||(31929826-31929889)
chr7 (822-898)||(40298802-40298880)
chr7 (816-863)||(44567154-44567201)
chr7 (816-862)||(1741983-1742029)
chr7 (832-889)||(16565229-16565287)
chr7 (832-889)||(16600375-16600433)
chr7 (816-898)||(21819240-21819322)
chr7 (686-716)||(40927282-40927312)
chr7 (791-863)||(24424966-24425036)
chr7 (784-898)||(31929943-31930057)
chr7 (821-899)||(36912061-36912141)
chr7 (810-863)||(48843543-48843596)
[»] chr3 (26 HSPs)
chr3 (620-715)||(44064386-44064482)
chr3 (652-716)||(50038136-50038199)
chr3 (652-715)||(42571493-42571556)
chr3 (652-716)||(19115508-19115572)
chr3 (822-901)||(38457414-38457493)
chr3 (810-898)||(42939923-42940013)
chr3 (811-899)||(41287606-41287695)
chr3 (656-716)||(3985983-3986043)
chr3 (652-716)||(4759412-4759476)
chr3 (652-716)||(42886871-42886935)
chr3 (810-900)||(11019932-11020023)
chr3 (810-898)||(30431075-30431164)
chr3 (816-861)||(32492293-32492338)
chr3 (784-863)||(48901711-48901788)
chr3 (784-863)||(48903277-48903354)
chr3 (816-863)||(3152918-3152965)
chr3 (816-863)||(30426436-30426483)
chr3 (816-863)||(47895456-47895503)
chr3 (821-898)||(48169401-48169480)
chr3 (821-856)||(51188425-51188460)
chr3 (816-862)||(11393537-11393583)
chr3 (837-900)||(13485940-13486005)
chr3 (816-902)||(36460758-36460844)
chr3 (837-887)||(51381690-51381739)
chr3 (816-865)||(22857079-22857128)
chr3 (655-716)||(45460788-45460849)
[»] chr6 (12 HSPs)
chr6 (620-716)||(32429409-32429506)
chr6 (652-716)||(4850462-4850526)
chr6 (652-720)||(29400063-29400131)
chr6 (822-899)||(1924784-1924863)
chr6 (652-716)||(19689452-19689516)
chr6 (816-899)||(9940601-9940686)
chr6 (784-863)||(4850580-4850657)
chr6 (818-899)||(23936698-23936781)
chr6 (784-867)||(29399934-29400014)
chr6 (837-898)||(31275777-31275840)
chr6 (818-898)||(26189462-26189544)
chr6 (837-898)||(29915494-29915558)
[»] scaffold0010 (1 HSPs)
scaffold0010 (789-887)||(153277-153376)
[»] chr5 (23 HSPs)
chr5 (652-716)||(43584343-43584407)
chr5 (652-715)||(10344899-10344962)
chr5 (833-901)||(13066666-13066735)
chr5 (656-716)||(7317150-7317210)
chr5 (652-716)||(32158664-32158728)
chr5 (652-716)||(25362767-25362831)
chr5 (784-898)||(3025016-3025130)
chr5 (662-716)||(35765877-35765931)
chr5 (656-716)||(3024902-3024962)
chr5 (816-863)||(26660746-26660793)
chr5 (816-863)||(26932339-26932386)
chr5 (816-863)||(34446142-34446189)
chr5 (816-863)||(36073745-36073792)
chr5 (816-855)||(38362252-38362291)
chr5 (816-899)||(2729901-2729986)
chr5 (816-862)||(13761549-13761595)
chr5 (822-905)||(36660375-36660460)
chr5 (686-720)||(40776576-40776610)
chr5 (784-899)||(10345017-10345133)
chr5 (833-901)||(12992017-12992086)
chr5 (810-863)||(15776587-15776640)
chr5 (816-898)||(31055691-31055775)
chr5 (822-863)||(31557455-31557496)
[»] chr2 (30 HSPs)
chr2 (652-716)||(5717634-5717698)
chr2 (652-716)||(32022867-32022931)
chr2 (652-720)||(45423736-45423804)
chr2 (784-863)||(4051788-4051866)
chr2 (816-899)||(7028927-7029010)
chr2 (652-715)||(27986161-27986224)
chr2 (652-715)||(28072693-28072756)
chr2 (822-898)||(4766308-4766385)
chr2 (655-716)||(16792608-16792669)
chr2 (810-898)||(34546440-34546529)
chr2 (837-899)||(1360129-1360194)
chr2 (816-888)||(17702983-17703057)
chr2 (652-715)||(43427255-43427317)
chr2 (818-900)||(11188609-11188691)
chr2 (816-898)||(16792439-16792521)
chr2 (662-716)||(35799324-35799378)
chr2 (816-900)||(441346-441433)
chr2 (816-898)||(12342047-12342131)
chr2 (810-899)||(18579117-18579211)
chr2 (818-897)||(776001-776081)
chr2 (652-716)||(14286053-14286116)
chr2 (652-716)||(22620301-22620365)
chr2 (816-863)||(4133015-4133062)
chr2 (832-899)||(7042317-7042384)
chr2 (816-863)||(29396795-29396842)
chr2 (789-862)||(4658323-4658394)
chr2 (837-899)||(4536527-4536591)
chr2 (810-863)||(12566089-12566142)
chr2 (817-898)||(29808768-29808849)
chr2 (816-900)||(37038881-37038966)
[»] scaffold0332 (2 HSPs)
scaffold0332 (652-715)||(3777-3840)
scaffold0332 (784-863)||(3895-3972)
[»] scaffold0078 (1 HSPs)
scaffold0078 (832-891)||(1544-1604)
[»] scaffold0047 (1 HSPs)
scaffold0047 (818-863)||(70571-70616)


Alignment Details
Target: chr4 (Bit Score: 921; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 921; E-Value: 0
Query Start/End: Original strand, 8 - 1052
Target Start/End: Original strand, 55091753 - 55092811
Alignment:
Q  8 ttcaccgcttccaaatccaaacacaccacaacactcccgaggaggccgagactcaaagaaaatcataccatttcaactgcttcaaagaaactcaaagctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55091753 ttcaccgcttccaaatccaaacacaccacaacactcccgaggaggccgagactcaaagaaaatcataccatttcaactgcttcaaagaaactcaaagctt 55091852  T
Q  108 ttcaactcgaacaatctcactcctccagaatcgaacaaatcaaaaaacaacaatcgcttaaatcgttagccaaatcactcactgtttggcttaatttcct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55091853 ttcaactcgaacaatctcactcctccagaatcgaacaaatcaaacaacaacaatcgcttaaatcgttagccaaatcactcactgtttggcttaatttcct 55091952  T
Q  208 tctcgaatcacctgcttcttgcggttgcgatgtctcaatcgccggtggaagtcagatcgcagatgcttctccggtgtcgagtaaggggaaacgtgataat 307  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55091953 tctcgaatcacctgcttcttgcggttgcgatgtttcaatcgccggtggaagtcagatcgcagatgcttctccggtgacgagtaaggggaaacgtgataat 55092052  T
Q  308 gttccgggaaattcagttggagttgattctacttggagaactccaaaacgacagaggaagacgacgatggcaacttcttcgtcgcgttttggtaaggaga 407  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  55092053 gttccgggaaattcatttggagttgattctacttggagaactccgaaacgacagaggaagacgacgatgacaacttcttcgtcgcgttttggtaaggaga 55092152  T
Q  408 atgtgtctgctgtggatatgcagaattcatcgttttcgcgtttgaaggattctttgaaggatgtatgtagcttcgatgattctaagctgcggatgagtgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  55092153 atgtgtctgctgtggatatgcagaattcatcgttttcgcgtttgaaggattctttgaaggatgtatgtagcttcgatgattttaagcagcggatgagtgt 55092252  T
Q  508 ttatttgagtctcggaacttgtgaagatattttccatgtcatgaatcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55092253 ttatttgagtctcggaacttgtgaagatattttccatgtcatgaatcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaat 55092352  T
Q  608 tatcgtgtactc------tttcaaaatgaatgttgttcaggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttacca 701  Q
    ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55092353 tatcgtgtactctatctgtttcaaaatgaatgttgttcaggtttctagagacatattaagaaatgcaatgatgaacaaatagataatgattattttacca 55092452  T
Q  702 aattatccttattaattataggtggcttttctactatcataaatgccaagtagaagtgatgcttatagatagtgtacatggatggaaggtacaattggaa 801  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55092453 aattatccttattaattataggtggcttttctgctatcataaatgccaagtagaagtgatgcttatagatagtgtacatggatggaaggtacaattggaa 55092552  T
Q  802 agaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagtattt 901  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55092553 agaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagtactt 55092652  T
Q  902 gttgaatccgacacacatttttatttatgttgttttgtttatcagac-attgatg-aggaaggctaaatatgaaggcacattgcccgattgtgacggatt 999  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  55092653 gttgaatctgacacacatttttatttatgttgttttgtttatcagacaattgatgaaggaaggctaaatatgaaggcacattgcccgatcgtgacggatt 55092752  T
Q  1000 tagggttg-aggata--ggcataaaagtcc-tatgtg-tataatccaag-tggctgcga 1052  Q
    |||||||| ||||||  | ||||||||||| |||||| ||||||||||| |||||||||    
T  55092753 tagggttgaaggataaggccataaaagtccttatgtgttataatccaagttggctgcga 55092811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 653 - 720
Target Start/End: Complemental strand, 37624741 - 37624674
Alignment:
Q  653 catattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    ||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||    
T  37624741 catattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaattat 37624674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 655 - 720
Target Start/End: Original strand, 21864357 - 21864422
Alignment:
Q  655 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||||||    
T  21864357 tattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaattat 21864422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 655 - 720
Target Start/End: Original strand, 21920218 - 21920283
Alignment:
Q  655 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||||||    
T  21920218 tattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaattat 21920283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 4505522 - 4505458
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  4505522 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 4505458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 7905967 - 7906031
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  7905967 acatattaagaaatgcaatgattaaaagaaagagaattgttattttaccaaattatccttattaa 7906031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 25231361 - 25231297
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||| |||||||    
T  25231361 acatattaagaaatgcaatgattaaaagaaagagaatgattattttatcaaattatctttattaa 25231297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 656 - 716
Target Start/End: Original strand, 36558264 - 36558324
Alignment:
Q  656 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||| |||| | |||||||  ||||||||||||||||||||||||||    
T  36558264 attaagaaatgcaatgattaaaagaaagataatttttattttaccaaattatccttattaa 36558324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 51733465 - 51733529
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||| ||||||||    
T  51733465 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattattcttattaa 51733529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 22220330 - 22220393
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    |||||||||||||||||||||| |||| |  || |||| |||||||||||||||||||||||||    
T  22220330 acatattaagaaatgcaatgattaaaagaatgagaatggttattttaccaaattatccttatta 22220393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 52915513 - 52915576
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    |||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||||| ||||||    
T  52915513 acatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatctttatta 52915576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 784 - 901
Target Start/End: Original strand, 22220448 - 22220565
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaa--cttttttgttgaagtgacacttatt 881  Q
    |||| |||||||||| ||||||| |   ||| ||||||||||||||| |||||||||||| ||||||||||||   ||||||| | |||||||||| |||    
T  22220448 tggagggtacaattgaaaagaaaaag--ttattattgcattgaaaattgaaaatgacatttattttgaaacaatttttttttgctaaagtgacactcatt 22220545  T
Q  882 ttgaaacagatggagtattt 901  Q
    |  |||| || |||||||||    
T  22220546 tcaaaacggagggagtattt 22220565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 816 - 864
Target Start/End: Complemental strand, 24940917 - 24940868
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaac-aacttttttg 864  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  24940917 tattgcattggaaatcgaaaatgacattcattttgaaacaaacttttttg 24940868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 654 - 719
Target Start/End: Complemental strand, 28308910 - 28308845
Alignment:
Q  654 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaatta 719  Q
    |||||||||||||||||||| |||| | ||||||  ||||||||| |||||||| |||||||||||    
T  28308910 atattaagaaatgcaatgattaaaagaaagataaatattattttatcaaattattcttattaatta 28308845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 27943665 - 27943712
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  27943665 tattgcattgaaaattgaaagtgacattcattttgaaacaattttttt 27943712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 837 - 898
Target Start/End: Original strand, 56556391 - 56556455
Alignment:
Q  837 tgacattcattttgaaacaacttttttgttg---aagtgacacttattttgaaacagatggagta 898  Q
    |||||||||||||||||||| |||||| |||   |||||||||| ||||| ||||||||||||||    
T  56556391 tgacattcattttgaaacaattttttttttgctaaagtgacactcattttaaaacagatggagta 56556455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 810 - 863
Target Start/End: Complemental strand, 20448083 - 20448030
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  20448083 aattattattgcattgaaaactgaaagtgacattcattttgaaacaattttttt 20448030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 789 - 864
Target Start/End: Original strand, 40345441 - 40345514
Alignment:
Q  789 ggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttg 864  Q
    |||||||||| ||||||| |  |||| |||||||||| |||  |||| |||||||||||||||||||| |||||||    
T  40345441 ggtacaattgaaaagaaaaa--attattattgcattggaaactgaaagtgacattcattttgaaacaatttttttg 40345514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 898
Target Start/End: Complemental strand, 4505406 - 4505291
Alignment:
Q  783 atggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaa--cttttttgttgaagtgacacttat 880  Q
    ||||| |||||||||| ||||||| |   ||| |||||||||| |||  |||| ||||||||||||||||||||   ||||||| | ||| |||||| ||    
T  4505406 atggagggtacaattgaaaagaaaaag--ttattattgcattggaaactgaaagtgacattcattttgaaacaatttttttttgctaaagcgacactcat 4505309  T
Q  881 tttgaaacagatggagta 898  Q
    |||||||| || ||||||    
T  4505308 tttgaaacggagggagta 4505291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 789 - 863
Target Start/End: Original strand, 45043682 - 45043754
Alignment:
Q  789 ggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||||||| |  |||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||    
T  45043682 ggtacaattgaaaagaaaaa--attattattgcattgaaaactgaaagtgacattcattttaaaacaattttttt 45043754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 817 - 852
Target Start/End: Original strand, 47306264 - 47306299
Alignment:
Q  817 attgcattgaaaatcgaaaatgacattcattttgaa 852  Q
    |||||||||||||| |||||||||||||||||||||    
T  47306264 attgcattgaaaattgaaaatgacattcattttgaa 47306299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 789 - 863
Target Start/End: Original strand, 52848148 - 52848220
Alignment:
Q  789 ggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||||||| |  |||| |||||||||| |||| |||| ||||||||||||| |||||| ||||||    
T  52848148 ggtacaattgaaaagaaaaa--attattattgcattggaaattgaaagtgacattcattttaaaacaattttttt 52848220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 818 - 864
Target Start/End: Original strand, 1868217 - 1868263
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaacttttttg 864  Q
    |||||||||||||  ||| |||||||||||||||||||| |||||||    
T  1868217 ttgcattgaaaatgtaaagtgacattcattttgaaacaatttttttg 1868263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 640 - 674
Target Start/End: Complemental strand, 30106444 - 30106410
Alignment:
Q  640 aggtttctagagacatattaagaaatgcaatgatg 674  Q
    ||||||||||| |||||||||||||||||||||||    
T  30106444 aggtttctagacacatattaagaaatgcaatgatg 30106410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 789 - 863
Target Start/End: Complemental strand, 30261322 - 30261250
Alignment:
Q  789 ggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||||||| ||| ||| |||||||||| |||  |||| |||||||||||||||||||| ||||||    
T  30261322 ggtacaattgaaaagaaa-aca-ttattattgcattggaaactgaaagtgacattcattttgaaacaattttttt 30261250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 882
Target Start/End: Original strand, 47305265 - 47305331
Alignment:
Q  817 attgcattgaaaatcgaaaatgacattcattttgaaacaacttttt-tgttgaagtgacacttattt 882  Q
    ||||||||| |||| ||||||  | ||||||||||||||| ||||| |||| |||||||||||||||    
T  47305265 attgcattggaaattgaaaatcgctttcattttgaaacaattttttatgttaaagtgacacttattt 47305331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 822 - 863
Target Start/End: Original strand, 22089172 - 22089213
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||||||||||||||| ||||| ||| |||||||||    
T  22089172 attgaaaatcgaaaatgacattaattttaaaataactttttt 22089213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 655 - 716
Target Start/End: Original strand, 43337721 - 43337782
Alignment:
Q  655 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||| |||||| ||||||| |||| | ||| ||||||||||||| ||||||||| |||||||    
T  43337721 tattgagaaatacaatgattaaaagaaagagaatgattattttatcaaattatctttattaa 43337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 822 - 888
Target Start/End: Complemental strand, 50072310 - 50072242
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaac 888  Q
    |||||||||  ||| |||||||||||||||||||| ||||||  | | |||||||||| ||||||||||    
T  50072310 attgaaaatgtaaagtgacattcattttgaaacaattttttttggctaaagtgacactcattttgaaac 50072242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 787 - 863
Target Start/End: Original strand, 54042275 - 54042349
Alignment:
Q  787 aaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||||| ||||||| |  |||| |||| ||||| ||| ||||| ||||||||||||| |||||| ||||||    
T  54042275 aaggtacaattgaaaagaaaaa--attattattacattggaaaccgaaagtgacattcattttaaaacaattttttt 54042349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 7e-21; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 14593310 - 14593374
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  14593310 acatattaagaaatgcaatgattaaaaaaaagataatggttattttaccaaattatccttattaa 14593374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 654 - 720
Target Start/End: Complemental strand, 30293520 - 30293454
Alignment:
Q  654 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    |||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||||    
T  30293520 atattaagaaatgcaatgattaaaagaaagataatggttattttaccaaattatccttattaattat 30293454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 52023938 - 52024001
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  52023938 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttatta 52024001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 620 - 716
Target Start/End: Complemental strand, 50249529 - 50249432
Alignment:
Q  620 tttcaaaatgaatgttgttc-aggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||| |||||||  |||| | || | |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  50249529 tttcaaaatgagtgttgttttaggtctttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 50249432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 12591047 - 12591111
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||| |||||| |||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  12591047 acatgttaagatatgcaatgattaaaagaaagataatgattattttaccaaattatccttattaa 12591111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 720
Target Start/End: Original strand, 44257646 - 44257714
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    ||||||||| |||||||||||| |||| | ||| ||| |||||||||||||||||||||||||||||||    
T  44257646 acatattaataaatgcaatgattaaaagaaagagaataattattttaccaaattatccttattaattat 44257714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 34047198 - 34047261
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||| ||||||    
T  34047198 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcattatta 34047261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 14373378 - 14373442
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | | | |||| ||||||||||||||||||||||||||    
T  14373378 acatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaa 14373442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 34032045 - 34032109
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||| |||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  34032045 acatattaaaaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 34032109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 652 - 714
Target Start/End: Original strand, 26352046 - 26352108
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatt 714  Q
    ||||||||||||||||||| || |||| | ||| |||| ||||||||||||||||||||||||    
T  26352046 acatattaagaaatgcaattattaaaagaaagagaatgtttattttaccaaattatccttatt 26352108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 27721144 - 27721080
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||| |||||||||||| |||| | ||  ||||||||||||| |||||||||||||||||    
T  27721144 acatattaaaaaatgcaatgattaaaagaaagtgaatgattattttatcaaattatccttattaa 27721080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 27721259 - 27721195
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||| ||||||||| || |||| | ||| ||||||||||||| |||||||||||||||||    
T  27721259 acatattaaaaaatgcaataattaaaagaaagagaatgattattttatcaaattatccttattaa 27721195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 821 - 898
Target Start/End: Complemental strand, 30685559 - 30685480
Alignment:
Q  821 cattgaaaatcgaaaatgacattcattttgaaacaactt--ttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||  || |||||||||||||||||||||| ||  ||||| | |||||||||| ||||||||||||| ||||||    
T  30685559 cattgaaaagtgagaatgacattcattttgaaacaaattatttttgctaaagtgacactcattttgaaacagagggagta 30685480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 821 - 901
Target Start/End: Complemental strand, 11066039 - 11065957
Alignment:
Q  821 cattgaaaatcgaaaatgacattcattttgaaacaact--tttttgttgaagtgacacttattttgaaacagatggagtattt 901  Q
    |||||||||  || |||||||||||||||||||||| |  |||||| | |||||||||||||||||||| ||| ||| |||||    
T  11066039 cattgaaaagtgagaatgacattcattttgaaacaaattatttttgctaaagtgacacttattttgaaatagaaggaatattt 11065957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 33622478 - 33622525
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||||    
T  33622478 tattgcattgaaaatcgaaaatgacattcattttaaaataattttttt 33622525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 810 - 864
Target Start/End: Original strand, 38531404 - 38531458
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttg 864  Q
    ||||| |||||||||| |||  ||||||||||||||||||||||||| |||||||    
T  38531404 aattattattgcattggaaactgaaaatgacattcattttgaaacaatttttttg 38531458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 620 - 725
Target Start/End: Complemental strand, 8565981 - 8565877
Alignment:
Q  620 tttcaaaatgaatgttgttcaggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaatta 719  Q
    ||||||||||||||| ||| |||||| || | ||||||||||||||||||| |  | || | |||||||  | ||||||||||||||| |||||||| ||    
T  8565981 tttcaaaatgaatgtcgttaaggtttttacacacatattaagaaatgcaataaatagaaga-agataatagtaattttaccaaattattcttattaacta 8565883  T
Q  720 taggtg 725  Q
    | ||||    
T  8565882 ttggtg 8565877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 863
Target Start/End: Complemental strand, 15573674 - 15573598
Alignment:
Q  789 ggtacaattggaaagaaatacaa--ttagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||||||| | ||  ||| ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  15573674 ggtacaattgaaaagaaaaaaaaagttattattgcattgaaaactgaaagtgacattcattttgaaacaattttttt 15573598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 784 - 901
Target Start/End: Original strand, 34032163 - 34032280
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaa--cttttttgttgaagtgacacttatt 881  Q
    |||| |||||||||| ||||||| |  |||| |||||||||| |||  |||| ||||||||||||||||||||   ||||||| | ||| |||||| |||    
T  34032163 tggacggtacaattgaaaagaaaaa--attattattgcattggaaactgaaagtgacattcattttgaaacaatttttttttgctaaagcgacactcatt 34032260  T
Q  882 ttgaaacagatggagtattt 901  Q
    ||||| | || |||||||||    
T  34032261 ttgaagcggagggagtattt 34032280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 832 - 900
Target Start/End: Complemental strand, 43929707 - 43929636
Alignment:
Q  832 gaaaatgacattcattttgaaacaacttttttgttg---aagtgacacttattttgaaacagatggagtatt 900  Q
    |||| |||||||||||||||||||| |||||| |||   |||||||||| |||||||||| || ||||||||    
T  43929707 gaaattgacattcattttgaaacaattttttttttgctaaagtgacactcattttgaaacggagggagtatt 43929636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 29567934 - 29567887
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| |||  |||| |||||||||||||||||||||||||||    
T  29567934 tattgcattggaaactgaaagtgacattcattttgaaacaactttttt 29567887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 48025367 - 48025414
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  48025367 tattgcattggaaaccgaaagtgacattcattttgaaacaattttttt 48025414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 784 - 899
Target Start/End: Complemental strand, 50249378 - 50249263
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttatt 881  Q
    |||| |||||||||| ||||||| |   ||| |||||||||| |||  |||| |||||||||||||||||||| ||||||  | | ||| |||||| |||    
T  50249378 tggagggtacaattgaaaagaaaaag--ttattattgcattggaaactgaaagtgacattcattttgaaacaaatttttttggctaaagcgacactcatt 50249281  T
Q  882 ttgaaacagatggagtat 899  Q
    || ||||||| |||||||    
T  50249280 ttaaaacagagggagtat 50249263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 714
Target Start/End: Original strand, 12484593 - 12484655
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatt 714  Q
    |||||||||||||| ||| ||| |||| | |||||||  | ||||||||||||||||||||||    
T  12484593 acatattaagaaatacaaagattaaaagaaagataattgtcattttaccaaattatccttatt 12484655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 821 - 863
Target Start/End: Original strand, 31491888 - 31491930
Alignment:
Q  821 cattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| |||| |||||||||||||||||||| ||||||    
T  31491888 cattgaaaattgaaagtgacattcattttgaaacaattttttt 31491930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 784 - 864
Target Start/End: Original strand, 52024317 - 52024395
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttg 864  Q
    |||| |||||||||| ||||||| |   ||| ||||||||||||||  |||||| ||||| |||||||||||| |||||||    
T  52024317 tggagggtacaattgaaaagaaaaat--ttattattgcattgaaaactgaaaataacatttattttgaaacaatttttttg 52024395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 396181 - 396245
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  396181 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 396245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 15160413 - 15160477
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  15160413 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 15160477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 787 - 901
Target Start/End: Original strand, 43084715 - 43084827
Alignment:
Q  787 aaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaa 886  Q
    |||||||||||| ||||||| |   ||| ||||||||||||||  |||| ||||||||||||| ||| || ||||||| | ||  |||||| ||||||||    
T  43084715 aaggtacaattgaaaagaaaaag--ttattattgcattgaaaactgaaagtgacattcattttaaaataatttttttgctaaaacgacactcattttgaa 43084812  T
Q  887 acagatggagtattt 901  Q
    |||||||||||||||    
T  43084813 acagatggagtattt 43084827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 720
Target Start/End: Complemental strand, 17656093 - 17656025
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    ||||||||||||||| |||||| || | | | |||||||||||||||||||||||||||||||| ||||    
T  17656093 acatattaagaaatgtaatgattaagagaaaaataatgattattttaccaaattatccttattagttat 17656025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 39765827 - 39765891
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||| ||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  39765827 acatattaagaaatacaatgattaaaagaaagagaatgcttattttaccaaattatccttattaa 39765891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 816 - 898
Target Start/End: Complemental strand, 35356345 - 35356263
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||| |||  |||||||| ||||||||||||| || ||||||| | ||| |||||| |||||||||| |||||||||    
T  35356345 tattgcattggaaactgaaaatgatattcattttgaaataatttttttgctaaagcgacactaattttgaaacggatggagta 35356263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 810 - 863
Target Start/End: Original strand, 45359003 - 45359056
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  45359003 aattattattgcattgaaaattgaaaatgacagtcattttgaaacaaatttttt 45359056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 37559500 - 37559564
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||  |||||| ||||||||    
T  37559500 acatattaagaaatgcaatgattaaaataaagagaatgattattttacataattattcttattaa 37559564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 786 - 863
Target Start/End: Complemental strand, 6374480 - 6374405
Alignment:
Q  786 gaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||| ||||||| |   ||| ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  6374480 gaaggtacaattgaaaagaaaaag--ttattattgcattgaaaactgaaagtgacattcattttgaaacaattttttt 6374405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 654 - 716
Target Start/End: Complemental strand, 40362619 - 40362557
Alignment:
Q  654 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||| | | |||| ||| |||| |||||||||||||||||| |||||||    
T  40362619 atattaagaaatgcaatgcttagaaaaaagagaatgcttattttaccaaattatctttattaa 40362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 818 - 888
Target Start/End: Complemental strand, 7129337 - 7129265
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaa--cttttttgttgaagtgacacttattttgaaac 888  Q
    |||||||||||||  ||| ||||||||||||||||| ||   ||||||||| |||||||||| ||||||||||    
T  7129337 ttgcattgaaaatgtaaagtgacattcattttgaaataatttttttttgttaaagtgacactcattttgaaac 7129265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 894
Target Start/End: Original strand, 39765974 - 39766054
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatgg 894  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||  | | ||| |||||| ||||||||||| ||||    
T  39765974 tattgcattgaaaactgaaagtgacattcattttgaaacaattttttttggctaaagcgacactcattttgaaacaaatgg 39766054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 7839496 - 7839449
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  7839496 tattgcattggaaattgaaagtgacattcattttgaaacaattttttt 7839449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 837 - 899
Target Start/End: Complemental strand, 27416518 - 27416455
Alignment:
Q  837 tgacattcattttgaaacaa-cttttttgttgaagtgacacttattttgaaacagatggagtat 899  Q
    ||||||||||||||||| ||  ||||||||| |||| ||||| |||||||||| ||||||||||    
T  27416518 tgacattcattttgaaataattttttttgttaaagtaacactcattttgaaacggatggagtat 27416455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 40228612 - 40228565
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  40228612 tattgcattgaaaactgaaagtgacattcattttgaaacaattttttt 40228565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 810 - 888
Target Start/End: Complemental strand, 514918 - 514840
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaac 888  Q
    ||||| ||||||||||||||| |||| ||||||||||||| ||| |  |||||||||  |  |||||| ||||||||||    
T  514918 aattattattgcattgaaaattgaaagtgacattcattttaaaatattttttttgttacaacgacactcattttgaaac 514840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 898
Target Start/End: Complemental strand, 11335859 - 11335797
Alignment:
Q  837 tgacattcattttgaaacaacttttttgttga-agtgacacttattttgaaacagatggagta 898  Q
    |||||||||||||||||||| | ||||| | | ||||||||| ||||||||||||| ||||||    
T  11335859 tgacattcattttgaaacaaatattttggttagagtgacactcattttgaaacagacggagta 11335797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 620 - 720
Target Start/End: Complemental strand, 12339941 - 12339842
Alignment:
Q  620 tttcaaaatgaatgttgttca-ggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaatt 718  Q
    ||||||||||||||| ||| | ||||| || | ||||||||||||||||||||||   |||| ||| |||  ||||||||| ||||||| |||||| |||    
T  12339941 tttcaaaatgaatgtcgtttaaggtttttacacacatattaagaaatgcaatgat--taaaagagagaattgttattttacaaaattattcttattgatt 12339844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 784 - 849
Target Start/End: Complemental strand, 36921425 - 36921362
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcatttt 849  Q
    ||||||||||||||| ||||||| |  |||| ||||||||||||||| |||| |||| ||||||||    
T  36921425 tggaaggtacaattgaaaagaaaaa--attattattgcattgaaaattgaaagtgacgttcatttt 36921362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 895
Target Start/End: Complemental strand, 40362473 - 40362392
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgt--tgaagtgacacttattttgaaacagatgga 895  Q
    ||||||||||||||  |||| ||||||||||||| |||||| |||||| |  | ||| |||||| |||||||||| ||||||    
T  40362473 tattgcattgaaaactgaaagtgacattcattttaaaacaattttttttttctaaagcgacactcattttgaaacggatgga 40362392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 662 - 716
Target Start/End: Complemental strand, 43724558 - 43724504
Alignment:
Q  662 aaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||||  |||||||    
T  43724558 aaatgcaatgattaaaagaaagagaatgattattttaccaaattatttttattaa 43724504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 784 - 900
Target Start/End: Complemental strand, 43724450 - 43724334
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt-gttgaagtgacacttattt 882  Q
    ||||||||||||||| | | ||| | ||||| |||||||||| |||  |||| ||| |||||||||||||||| |||||| | | ||| ||| || ||||    
T  43724450 tggaaggtacaattgaagaaaaaaa-aattattattgcattggaaactgaaagtgaaattcattttgaaacaatttttttagctaaagcgacgctcattt 43724352  T
Q  883 tgaaacagatggagtatt 900  Q
    |||||| |||| ||||||    
T  43724351 tgaaacggatgaagtatt 43724334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 31883970 - 31883906
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  31883970 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 31883906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 2297229 - 2297165
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||| |||||||    
T  2297229 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatctttattaa 2297165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 6747412 - 6747348
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  6747412 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 6747348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 12977651 - 12977715
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  12977651 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 12977715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 12983109 - 12983173
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  12983109 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 12983173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 18270764 - 18270700
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | | | |||||||||||||||||||||||||||||||    
T  18270764 acatattaagaaatgcaatgattaaaagaaatagaatgattattttaccaaattatccttattaa 18270700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 18292521 - 18292457
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  18292521 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 18292457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 37502505 - 37502441
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  37502505 acatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 37502441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 654 - 715
Target Start/End: Original strand, 715830 - 715891
Alignment:
Q  654 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    |||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||||||||||    
T  715830 atattaagaaatgcaatgattaaaagaaagaaaatcattattttaccaaattatccttatta 715891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 624 - 716
Target Start/End: Complemental strand, 42286123 - 42286030
Alignment:
Q  624 aaaatgaatgttgttca-ggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||| ||| | ||||| || | |||||||||||||||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  42286123 aaaatgaatgtcgtttaaggtttttacaaacatattaagaaatgcaatgattaaaataaagagaattgttattttaccaaattatccttattaa 42286030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 715
Target Start/End: Complemental strand, 25441058 - 25440995
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    ||||||||||||||| |||||| |||| | ||| |||||||||||||| |||||||||||||||    
T  25441058 acatattaagaaatgtaatgattaaaagaaagagaatgattattttactaaattatccttatta 25440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 44567007 - 44567070
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||||||||||| || |||||| | | ||||||||||||| |||||||||||||||||    
T  44567007 acatattaagaaatgcaataattaaaaaaaa-agaatgattattttatcaaattatccttattaa 44567070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 653 - 716
Target Start/End: Complemental strand, 34274979 - 34274916
Alignment:
Q  653 catattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||||| ||||||| |||| | ||| |||| |||||||||||||||||| |||||||    
T  34274979 catattaagaaatacaatgattaaaagaaagagaatggttattttaccaaattatctttattaa 34274916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 653 - 720
Target Start/End: Complemental strand, 47187847 - 47187780
Alignment:
Q  653 catattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    |||||||| ||||||| |||| |||| | ||| |||  ||||||||||||||||||||||||||||||    
T  47187847 catattaaaaaatgcattgattaaaagaaagagaattgttattttaccaaattatccttattaattat 47187780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 816 - 898
Target Start/End: Complemental strand, 22298034 - 22297952
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||| |||  |||| |||||||||||||||||||| ||||||| | ||  |||||| ||||| |||| |||||||||    
T  22298034 tattgcattggaaactgaaagtgacattcattttgaaacaatttttttgctaaaacgacactcattttaaaacggatggagta 22297952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 784 - 864
Target Start/End: Original strand, 715946 - 716024
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttg 864  Q
    |||| |||||||||| ||||||| |  |||| |||||||||| |||  |||| |||||||||||||||||||| |||||||    
T  715946 tggagggtacaattgaaaagaaaaa--attattattgcattggaaactgaaagtgacattcattttgaaacaaattttttg 716024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 833 - 901
Target Start/End: Complemental strand, 1103506 - 1103435
Alignment:
Q  833 aaaatgacattcattttgaaacaactttttt---gttgaagtgacacttattttgaaacagatggagtattt 901  Q
    |||||||||||||||||||||||| ||||||   | | |||||||||| ||| |||||| ||||||||||||    
T  1103506 aaaatgacattcattttgaaacaaattttttctggctaaagtgacactcattatgaaacggatggagtattt 1103435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 787 - 863
Target Start/End: Complemental strand, 37490849 - 37490775
Alignment:
Q  787 aaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||||| ||||||| |  |||| ||||||||||||||  |||| ||||||||||||||| |||| ||||||    
T  37490849 aaggtacaattgaaaagaaaaa--attattattgcattgaaaactgaaagtgacattcattttgatacaattttttt 37490775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 784 - 863
Target Start/End: Original strand, 12977769 - 12977846
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||| |||||||||| ||||||| |   ||| |||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  12977769 tggatggtacaattgaaaagaaaaag--ttattattgcattggaaattgaaagtgacattcattttgaaacaattttttt 12977846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 817 - 888
Target Start/End: Original strand, 36447186 - 36447258
Alignment:
Q  817 attgcattgaaaatcgaaaatgacattcattttgaaacaactttttt-gttgaagtgacacttattttgaaac 888  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||| | | ||| |||||| ||||||||||    
T  36447186 attgtattgaaaatgtaaaatgacattcattttgaaacaatttttttagctaaagcgacactcattttgaaac 36447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 821 - 898
Target Start/End: Complemental strand, 40800024 - 40799945
Alignment:
Q  821 cattgaaaatcgaaaatgacattcattttgaaacaact--tttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||  || |||||||||||||||||||||| |  |||||| | |||||||||| |||||||||| || ||||||    
T  40800024 cattgaaaagtgagaatgacattcattttgaaacaaattatttttgctaaagtgacactcattttgaaacggagggagta 40799945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 2297076 - 2297029
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  2297076 tattgcattgaaaactgaaagtgacattcattttgaaacaattttttt 2297029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 898
Target Start/End: Complemental strand, 17869274 - 17869192
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||||  | | |||||||||| ||||| |||| || ||||||    
T  17869274 ttgcattggaaatgtaaaatgacattcattttgaaacaaatttttttcgctaaagtgacactcattttaaaacggagggagta 17869192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 18292373 - 18292326
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  18292373 tattgcattggaaattgaaagtgacattcattttgaaacaattttttt 18292326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 789 - 863
Target Start/End: Original strand, 29531023 - 29531095
Alignment:
Q  789 ggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||||||| |  |||| ||||||||||||||  |||||||||||||||||  |||||| ||||||    
T  29531023 ggtacaattgaaaagaaaaa--attattattgcattgaaaactgaaaatgacattcatttcaaaacaattttttt 29531095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 716
Target Start/End: Original strand, 31929826 - 31929889
Alignment:
Q  654 atattaagaaatgcaatgatgaaaaaatagataatgattattttacc-aaattatccttattaa 716  Q
    |||||||||||||||||||| || | | ||| |||| |||||||||| ||||||||||||||||    
T  31929826 atattaagaaatgcaatgattaacagaaagagaatgtttattttaccaaaattatccttattaa 31929889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 898
Target Start/End: Complemental strand, 40298880 - 40298802
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||  ||| |||||||||||||||||||| ||||||  | | |||||||||| |||||||||| || ||||||    
T  40298880 attgaaaatgtaaagtgacattcattttgaaacaattttttttggctaaagtgacactcattttgaaacggagggagta 40298802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 44567154 - 44567201
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  44567154 tattgcattgaaaattgaaagtgacattcattttaaaacaaatttttt 44567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 862
Target Start/End: Complemental strand, 1742029 - 1741983
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttt 862  Q
    |||||||||| |||  |||| ||||||||||||||||||||||||||    
T  1742029 tattgcattggaaactgaaagtgacattcattttgaaacaacttttt 1741983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 832 - 889
Target Start/End: Original strand, 16565229 - 16565287
Alignment:
Q  832 gaaaatgacattcattttgaaacaactttttt-gttgaagtgacacttattttgaaaca 889  Q
    ||||||||||||||||||||||||| |||||| ||| ||  |||||||||||| |||||    
T  16565229 gaaaatgacattcattttgaaacaatttttttagttaaaacgacacttattttaaaaca 16565287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 832 - 889
Target Start/End: Complemental strand, 16600433 - 16600375
Alignment:
Q  832 gaaaatgacattcattttgaaacaactttttt-gttgaagtgacacttattttgaaaca 889  Q
    ||||||||||||||||||||||||| |||||| ||| ||  |||||||||||| |||||    
T  16600433 gaaaatgacattcattttgaaacaatttttttagttaaaacgacacttattttaaaaca 16600375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 898
Target Start/End: Complemental strand, 21819322 - 21819240
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    ||||| ||||||||  |||||| || ||||||||||||||| ||||| ||| ||  |||||| |||||||||  |||||||||    
T  21819322 tattgtattgaaaactgaaaataactttcattttgaaacaattttttagttaaaacgacactcattttgaaatggatggagta 21819240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 686 - 716
Target Start/End: Complemental strand, 40927312 - 40927282
Alignment:
Q  686 aatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||||||||||||    
T  40927312 aatgattattttaccaaattatccttattaa 40927282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 791 - 863
Target Start/End: Original strand, 24424966 - 24425036
Alignment:
Q  791 tacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||| |||||||||  |||| |||||||||  ||||  ||||| |||||||||||| ||||||||||||    
T  24424966 tacaattgaaaagaaata--attaatattgcattagaaattaaaaataacattcattttggaacaactttttt 24425036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 784 - 898
Target Start/End: Original strand, 31929943 - 31930057
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaa-cttttttgt-tgaagtgacacttatt 881  Q
    |||| |||||||||| ||||||| |  |||| ||||||||||||||  |||||| | ||||||||| ||| ||  |||||||| | ||| ||||||||||    
T  31929943 tggagggtacaattgaaaagaaaaa--attattattgcattgaaaactgaaaataatattcattttaaaataattttttttgtctaaagcgacacttatt 31930040  T
Q  882 ttgaaacagatggagta 898  Q
    || |||| |||||||||    
T  31930041 ttaaaacggatggagta 31930057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 821 - 899
Target Start/End: Complemental strand, 36912141 - 36912061
Alignment:
Q  821 cattgaaaatcgaaaatgacattcattttgaaacaa--cttttttgttgaagtgacacttattttgaaacagatggagtat 899  Q
    |||||||| | ||||| |||||||||||||||||||   ||||||| | ||| |||||| |||||||||| || |||||||    
T  36912141 cattgaaagttgaaaacgacattcattttgaaacaaattttttttgctaaagcgacactcattttgaaacggagggagtat 36912061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 810 - 863
Target Start/End: Complemental strand, 48843596 - 48843543
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||| ||||||||||||||  |||| ||||||||||||| |||||| ||||||    
T  48843596 aattattattgcattgaaaactgaaagtgacattcattttaaaacaaatttttt 48843543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 620 - 715
Target Start/End: Original strand, 44064386 - 44064482
Alignment:
Q  620 tttcaaaatgaatgt-tgttcaggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    ||||||||||| ||| | || |||||| || | |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  44064386 tttcaaaatgagtgtctttttaggtttttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttatta 44064482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 50038136 - 50038199
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  50038136 acatattaagaaatgcaatgattaaaaga-agagaatgattattttaccaaattatccttattaa 50038199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 42571493 - 42571556
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||||| ||||||||||||||||    
T  42571493 acatattaagaaatgcaatgattaaaagatagagaatggttattttatcaaattatccttatta 42571556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 19115572 - 19115508
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | | | |||| ||||||||||||||||||||||||||    
T  19115572 acatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaa 19115508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 822 - 901
Target Start/End: Complemental strand, 38457493 - 38457414
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagtattt 901  Q
    |||||||||  ||||||| |||||||||||||||  ||||||| | |||||||||| |||||||||  ||||||||||||    
T  38457493 attgaaaatgtaaaatgatattcattttgaaacattttttttgctaaagtgacactcattttgaaattgatggagtattt 38457414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 810 - 898
Target Start/End: Complemental strand, 42940013 - 42939923
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaact--tttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    ||||| || |||||||||||  ||||||||||||||||||||||||| |  |||||||| ||| |||||| ||||| |||| |||||||||    
T  42940013 aattaatagtgcattgaaaaatgaaaatgacattcattttgaaacaaattatttttgttaaagcgacactcattttaaaacggatggagta 42939923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 811 - 899
Target Start/End: Original strand, 41287606 - 41287695
Alignment:
Q  811 attagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgt-tgaagtgacacttattttgaaacagatggagtat 899  Q
    |||||||||||| || ||| ||||| |||||||||||||||||||| |||||||  | ||  ||||||||||||||||| || |||||||    
T  41287606 attagtattgcactggaaaccgaaagtgacattcattttgaaacaatttttttggctaaaacgacacttattttgaaacggagggagtat 41287695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 656 - 716
Target Start/End: Complemental strand, 3986043 - 3985983
Alignment:
Q  656 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  3986043 attaagaaatgcaatgattaaaagaaagagaatttttattttaccaaattatccttattaa 3985983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 4759476 - 4759412
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||||| |||||||| |||| | ||  |||| ||||||||||||||||||||||||||    
T  4759476 acatattaagaaaagcaatgattaaaagaaagcgaatggttattttaccaaattatccttattaa 4759412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 42886935 - 42886871
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||| ||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  42886935 acatattaagaactgcaatgattaaaagaaagagaattgttattttaccaaattatccttattaa 42886871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 810 - 900
Target Start/End: Original strand, 11019932 - 11020023
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttg-ttgaagtgacacttattttgaaacagatggagtatt 900  Q
    ||||| ||||||||||||||  |||| ||||||| ||||| |||||| ||||||| || ||  ||||||||||||||||| || ||||||||    
T  11019932 aattattattgcattgaaaaatgaaagtgacattaattttaaaacaaattttttgtttaaaaggacacttattttgaaacggaaggagtatt 11020023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 810 - 898
Target Start/End: Complemental strand, 30431164 - 30431075
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgt-tgaagtgacacttattttgaaacagatggagta 898  Q
    ||||| ||||||||||||||  |||| ||||||||||||||||| || |||||||  | ||  |||||| ||||||||||||| ||||||    
T  30431164 aattattattgcattgaaaactgaaagtgacattcattttgaaataatttttttggctaaaacgacactcattttgaaacagagggagta 30431075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 861
Target Start/End: Original strand, 32492293 - 32492338
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttt 861  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||    
T  32492293 tattgcattgaaaattgaaagtgacattcattttgaaacaattttt 32492338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 784 - 863
Target Start/End: Complemental strand, 48901788 - 48901711
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||| |||||||||| ||||||| |   ||| |||||||||| |||  ||||||||||||||||||||||||| ||||||    
T  48901788 tggagggtacaattgaaaagaaaaag--ttattattgcattggaaactgaaaatgacattcattttgaaacaattttttt 48901711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 784 - 863
Target Start/End: Complemental strand, 48903354 - 48903277
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||| |||||||||| ||||||| |   ||| |||||||||| |||  ||||||||||||||||||||||||| ||||||    
T  48903354 tggagggtacaattgaaaagaaaaag--ttattattgcattggaaactgaaaatgacattcattttgaaacaattttttt 48903277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 3152918 - 3152965
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  3152918 tattgcattgaaaactgaaagtgacattcattttgaaacaattttttt 3152965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 30426436 - 30426483
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| |||  ||||||||||||||||||||||||| ||||||    
T  30426436 tattgcattggaaactgaaaatgacattcattttgaaacaattttttt 30426483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 47895456 - 47895503
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  47895456 tattgcattggaaattgaaagtgacattcattttgaaacaattttttt 47895503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 898
Target Start/End: Complemental strand, 48169480 - 48169401
Alignment:
Q  821 cattgaaaatcgaaaatgacattcattttgaaa-caact-tttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||  ||||||||||||||||||||||  |||| ||| |||| |||||||||| ||||| ||||||| ||||||    
T  48169480 cattgaaaagtgaaaatgacattcattttgaaataaactatttgtgttaaagtgacactcattttaaaacagagggagta 48169401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 856
Target Start/End: Complemental strand, 51188460 - 51188425
Alignment:
Q  821 cattgaaaatcgaaaatgacattcattttgaaacaa 856  Q
    ||||||||||||||||||||||||||||| ||||||    
T  51188460 cattgaaaatcgaaaatgacattcattttcaaacaa 51188425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 862
Target Start/End: Complemental strand, 11393583 - 11393537
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttt 862  Q
    |||||||||| |||| |||||||||||||||||| |||||| |||||    
T  11393583 tattgcattggaaattgaaaatgacattcattttaaaacaaattttt 11393537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 900
Target Start/End: Original strand, 13485940 - 13486005
Alignment:
Q  837 tgacattcattttgaaacaact--tttttgttgaagtgacacttattttgaaacagatggagtatt 900  Q
    |||||||||||||||||||| |  |||||| | |||||||||| |||||||||| || ||||||||    
T  13485940 tgacattcattttgaaacaaattgtttttgctaaagtgacactcattttgaaactgagggagtatt 13486005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 902
Target Start/End: Complemental strand, 36460844 - 36460758
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagtatttg 902  Q
    ||||||||||||||  |||| ||| |||||||||||||||  ||||| | | ||  |||||| ||||||||  ||||||||||||||    
T  36460844 tattgcattgaaaactgaaagtgatattcattttgaaacatttttttggctaaaacgacactcattttgaagtagatggagtatttg 36460758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 887
Target Start/End: Complemental strand, 51381739 - 51381690
Alignment:
Q  837 tgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaa 887  Q
    ||||||| |||||||||||| |||||| ||||||||||||| |||||||||    
T  51381739 tgacatttattttgaaacaattttttt-ttgaagtgacactcattttgaaa 51381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 865
Target Start/End: Complemental strand, 22857128 - 22857079
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgt 865  Q
    |||| ||||||||||||||| ||||||||||||| |||||| ||| ||||    
T  22857128 tattacattgaaaatcgaaagtgacattcattttaaaacaattttgttgt 22857079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 655 - 716
Target Start/End: Complemental strand, 45460849 - 45460788
Alignment:
Q  655 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||||||| ||| |||| | | | |||  ||||||||||||||||||||||||||    
T  45460849 tattaagaaatgcaaagattaaaagaaataaaattgttattttaccaaattatccttattaa 45460788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 620 - 716
Target Start/End: Complemental strand, 32429506 - 32429409
Alignment:
Q  620 tttcaaaatgaatgttgttc-aggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||| |||||||  |||| | || | |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||| |||||||    
T  32429506 tttcaaaatgagtgttgttttaggtgtttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatctttattaa 32429409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 4850462 - 4850526
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  4850462 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 4850526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 720
Target Start/End: Complemental strand, 29400131 - 29400063
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||| ||||    
T  29400131 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattagttat 29400063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 822 - 899
Target Start/End: Original strand, 1924784 - 1924863
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagtat 899  Q
    |||||||||  ||||||||||||||||| |||||| ||||||  | | |||||||||| ||||||||||||| |||||||    
T  1924784 attgaaaatgtaaaatgacattcattttaaaacaaatttttttggctaaagtgacactcattttgaaacagagggagtat 1924863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 19689516 - 19689452
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||| |||||||||||| |||| | |||||||| |||||||||||||||||  |||||||    
T  19689516 acatattaaaaaatgcaatgattaaaagaaagataatggttattttaccaaattattattattaa 19689452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 816 - 899
Target Start/End: Complemental strand, 9940686 - 9940601
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaa--cttttttgttgaagtgacacttattttgaaacagatggagtat 899  Q
    ||||||||||||||  |||| ||||| ||||||| ||||||   ||||||||| ||| |||||| |||||||||| ||||||||||    
T  9940686 tattgcattgaaaactgaaagtgacaatcattttaaaacaatttttttttgttaaagcgacactcattttgaaacggatggagtat 9940601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 784 - 863
Target Start/End: Original strand, 4850580 - 4850657
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||| |||||||||| ||||||| |   ||| |||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  4850580 tggatggtacaattgaaaagaaaaag--ttattattgcattggaaattgaaagtgacattcattttgaaacaattttttt 4850657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 818 - 899
Target Start/End: Original strand, 23936698 - 23936781
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgt--tgaagtgacacttattttgaaacagatggagtat 899  Q
    |||||||||||||  ||| | |||||||||||||||||  |||||| |  | |||||||||| ||||||||||||| |||||||    
T  23936698 ttgcattgaaaatgtaaagtaacattcattttgaaacagtttttttttgctaaagtgacactcattttgaaacagagggagtat 23936781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 784 - 867
Target Start/End: Complemental strand, 29400014 - 29399934
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttg 867  Q
    |||| |||||||||| ||||||| |  |||| |||||||||| |||  |||| |||||||||||||||||||| ||||||||||    
T  29400014 tggagggtacaattgaaaagaaaaa--attattattgcattggaaactgaaagtgacattcattttgaaacaa-ttttttgttg 29399934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 837 - 898
Target Start/End: Original strand, 31275777 - 31275840
Alignment:
Q  837 tgacattcattttgaaacaacttttttgt--tgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||||||||||||| |||||| |  | ||| ||||||||||||||||| |||||||||    
T  31275777 tgacattcattttgaaacaatttttttttgctaaagcgacacttattttgaaacggatggagta 31275840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 898
Target Start/End: Complemental strand, 26189544 - 26189462
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||| ||||  ||||  |||||||||||||||||| ||||||  ||| ||| |||||| |||||||||| |||||||||    
T  26189544 ttgcattggaaatgtaaaacaacattcattttgaaacaattttttttggttaaagcgacactcattttgaaacggatggagta 26189462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 898
Target Start/End: Complemental strand, 29915558 - 29915494
Alignment:
Q  837 tgacattcattttgaaacaacttttttgt---tgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||||||||||||| |||||| |   | |||||||||| |||||||||| |||||||||    
T  29915558 tgacattcattttgaaacaatttttttttgactaaagtgacactcattttgaaacggatggagta 29915494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 789 - 887
Target Start/End: Complemental strand, 153376 - 153277
Alignment:
Q  789 ggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttg---aagtgacacttattttga 885  Q
    ||||||||||||| ||||||   |||  |||||||||||||| |||||||||||||||||||| |||| ||||||||||   || |||||||||||||||    
T  153376 ggtacaattggaatgaaatag--ttatcattgcattgaaaattgaaaatgacattcattttgacacaatttttttgttgttaaaatgacacttattttga 153279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 43584343 - 43584407
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  43584343 acatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 43584407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 10344899 - 10344962
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    |||||||||||||||||||||| |||| | ||| |||| |||||||||||||||||||||||||    
T  10344899 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttatta 10344962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 833 - 901
Target Start/End: Complemental strand, 13066735 - 13066666
Alignment:
Q  833 aaaatgacattcattttgaaacaactttttt-gttgaagtgacacttattttgaaacagatggagtattt 901  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||| ||| ||||||| |||||||||||    
T  13066735 aaaatgacattcattttgaaacaatttttttagttaaagtgacactcattgtgaaacaaatggagtattt 13066666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 656 - 716
Target Start/End: Complemental strand, 7317210 - 7317150
Alignment:
Q  656 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  7317210 attaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 7317150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 32158728 - 32158664
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| |||||||||||||||||| |||||||    
T  32158728 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatctttattaa 32158664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 25362767 - 25362831
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | ||| |||| || |||||||||| ||||||||||||    
T  25362767 acatattaagaaatgcaatgattaaaagaaagagaatggttgttttaccaaaatatccttattaa 25362831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 784 - 898
Target Start/End: Original strand, 3025016 - 3025130
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttatt 881  Q
    |||| |||||||||| ||||||| |   ||| |||||||||| |||   ||| |||||||||||||||||||| ||||||  | | ||| ||||||||||    
T  3025016 tggagggtacaattgaaaagaaaaag--ttattattgcattggaaactaaaagtgacattcattttgaaacaattttttttagctaaagcgacacttatt 3025113  T
Q  882 ttgaaacagatggagta 898  Q
    ||||||| |||||||||    
T  3025114 ttgaaacggatggagta 3025130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 716
Target Start/End: Original strand, 35765877 - 35765931
Alignment:
Q  662 aaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  35765877 aaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 35765931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 656 - 716
Target Start/End: Original strand, 3024902 - 3024962
Alignment:
Q  656 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||| ||| |||| | ||| |||| ||||||||||||||||||||| ||||    
T  3024902 attaagaaatgcaacgattaaaagaaagagaatggttattttaccaaattatcctttttaa 3024962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 26660793 - 26660746
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  26660793 tattgcattgaaaattgaaagtgacattcattttaaaacaattttttt 26660746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 26932386 - 26932339
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  26932386 tattgcattgaaaattgaaagtgacattcattttaaaacaattttttt 26932339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 34446142 - 34446189
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  34446142 tattgtattgaaaactgaaaatgacattcattttgaaacaattttttt 34446189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 36073745 - 36073792
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||||||||  |||||||||||||||| ||||||| ||||||    
T  36073745 tattgcattgaaaatttaaaatgacattcatttagaaacaattttttt 36073792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 855
Target Start/End: Original strand, 38362252 - 38362291
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaaca 855  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  38362252 tattgcattgaaaattgaaagtgacattcattttgaaaca 38362291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 899
Target Start/End: Original strand, 2729901 - 2729986
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagtat 899  Q
    |||||||||| |||  |||| |||||||||||||||||||| ||||||  ||| ||  |||||| |||||||||| || |||||||    
T  2729901 tattgcattggaaagtgaaagtgacattcattttgaaacaagtttttttggttaaaacgacactcattttgaaacggagggagtat 2729986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 862
Target Start/End: Complemental strand, 13761595 - 13761549
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttt 862  Q
    ||||||||||||||  |||| |||||||||||||||||||| |||||    
T  13761595 tattgcattgaaaagtgaaagtgacattcattttgaaacaatttttt 13761549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 822 - 905
Target Start/End: Complemental strand, 36660460 - 36660375
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagtatttgttg 905  Q
    |||||||||  ||| |||||||||||||||||||| ||||||  | | |||||||||| ||||||||||  | |||||| ||||||    
T  36660460 attgaaaatgtaaagtgacattcattttgaaacaattttttttggctaaagtgacactcattttgaaacgaagggagtaattgttg 36660375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 686 - 720
Target Start/End: Original strand, 40776576 - 40776610
Alignment:
Q  686 aatgattattttaccaaattatccttattaattat 720  Q
    ||||||||||| |||||||||||||||||||||||    
T  40776576 aatgattatttgaccaaattatccttattaattat 40776610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 784 - 899
Target Start/End: Original strand, 10345017 - 10345133
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt---gttgaagtgacacttat 880  Q
    |||| |||||||||| ||||||| |   ||| |||||||||| |||  |||| |||||||||||||||||||| ||||||   | | ||| |||||| ||    
T  10345017 tggagggtacaattgaaaagaaaaag--ttattattgcattggaaactgaaagtgacattcattttgaaacaatttttttttggctaaagcgacactcat 10345114  T
Q  881 tttgaaacagatggagtat 899  Q
    |||||||| || |||||||    
T  10345115 tttgaaacggagggagtat 10345133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 833 - 901
Target Start/End: Complemental strand, 12992086 - 12992017
Alignment:
Q  833 aaaatgacattcattttgaaacaactttttt-gttgaagtgacacttattttgaaacagatggagtattt 901  Q
    |||||||||||||||||||||||| |||||| ||  ||||||||||  || ||||||  |||||||||||    
T  12992086 aaaatgacattcattttgaaacaatttttttagtcaaagtgacactcgttgtgaaaccaatggagtattt 12992017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 810 - 863
Target Start/End: Original strand, 15776587 - 15776640
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||| |||||||||| ||||| ||| ||||||||||||| |||||| ||||||    
T  15776587 aattaatattgcattggaaatcaaaagtgacattcattttaaaacaattttttt 15776640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 898
Target Start/End: Complemental strand, 31055775 - 31055691
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagta 898  Q
    ||||| ||||||||| || | ||||||||||||| ||| || ||||||  | | || |||||||||||||||||| |||||||||    
T  31055775 tattgaattgaaaattgagagtgacattcattttaaaataattttttttggctaaaatgacacttattttgaaacggatggagta 31055691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 822 - 863
Target Start/End: Original strand, 31557455 - 31557496
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||  |||||||||||||||||||||||| ||||||    
T  31557455 attgaaaatgtaaaatgacattcattttgaaacaattttttt 31557496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 5717698 - 5717634
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||| |||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  5717698 acatattaaaaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 5717634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 32022867 - 32022931
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||||||||| |||||| |||| | ||| ||||||||||||||||||||||| |||||||    
T  32022867 acatattaagaaatgtaatgattaaaagaaagagaatgattattttaccaaattatctttattaa 32022931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 652 - 720
Target Start/End: Complemental strand, 45423804 - 45423736
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 720  Q
    ||||||||||||||| |||||| |||| | | | ||| |||||||||||||||||||||||||||||||    
T  45423804 acatattaagaaatgaaatgattaaaataaatagaattattattttaccaaattatccttattaattat 45423736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 784 - 863
Target Start/End: Original strand, 4051788 - 4051866
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||||||||||||| ||||||| | ||||| |||||||||| |||  |||| |||||||||||||||||||| ||||||    
T  4051788 tggaaggtacaattgaaaagaaaaa-aattattattgcattggaaactgaaagtgacattcattttgaaacaattttttt 4051866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 816 - 899
Target Start/End: Original strand, 7028927 - 7029010
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagtat 899  Q
    |||||||||| |||  ||||||||||||||||||||||||| ||||||| | ||  |||||| ||||| |||| ||||||||||    
T  7028927 tattgcattggaaagtgaaaatgacattcattttgaaacaatttttttgataaatcgacactcattttaaaacggatggagtat 7029010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 715
Target Start/End: Complemental strand, 27986224 - 27986161
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    ||||||||||||||||||| || |||| | ||| |||| |||||||||||||||||||||||||    
T  27986224 acatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttatta 27986161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 715
Target Start/End: Complemental strand, 28072756 - 28072693
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    ||||||||||||||||||| || |||| | ||| |||| |||||||||||||||||||||||||    
T  28072756 acatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttatta 28072693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 822 - 898
Target Start/End: Original strand, 4766308 - 4766385
Alignment:
Q  822 attgaaaatcgaaaatgacattcattttgaaaca-acttttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||  ||| ||||||||||||||||||| | ||||||| | |||||||||| |||||||||| |||||||||    
T  4766308 attgaaaatgtaaattgacattcattttgaaacagatttttttgctaaagtgacactcattttgaaacggatggagta 4766385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 716
Target Start/End: Complemental strand, 16792669 - 16792608
Alignment:
Q  655 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||| || | || | |||||||| ||||||||||||||||||||||||||    
T  16792669 tattaagaaatgcaattattataagaaagataatgcttattttaccaaattatccttattaa 16792608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 810 - 898
Target Start/End: Original strand, 34546440 - 34546529
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt-gttgaagtgacacttattttgaaacagatggagta 898  Q
    ||||| |||||||||| |||| |||| |||||||||||||||||||| |||||| ||| ||  |||||| |||||||||| || ||||||    
T  34546440 aattattattgcattggaaattgaaagtgacattcattttgaaacaatttttttggttaaaacgacactcattttgaaacggagggagta 34546529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 837 - 899
Target Start/End: Complemental strand, 1360194 - 1360129
Alignment:
Q  837 tgacattcattttgaaacaacttttttgttg---aagtgacacttattttgaaacagatggagtat 899  Q
    |||||||||||||||||||| |||||| |||   |||||||||| |||||||||| ||||||||||    
T  1360194 tgacattcattttgaaacaattttttttttgctaaagtgacactcattttgaaacggatggagtat 1360129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 816 - 888
Target Start/End: Complemental strand, 17703057 - 17702983
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaact--tttttgttgaagtgacacttattttgaaac 888  Q
    ||||||||||||||| |||| ||||||||||||| |||||| |  |||||||| ||| |||||| ||||||||||    
T  17703057 tattgcattgaaaattgaaagtgacattcattttaaaacaaattatttttgttaaagcgacactcattttgaaac 17702983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 43427255 - 43427317
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    ||||||||||||||||||| || |||| | ||| |||| |||||||||||||||||||||||||    
T  43427255 acatattaagaaatgcaat-attaaaataaagagaatggttattttaccaaattatccttatta 43427317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 818 - 900
Target Start/End: Original strand, 11188609 - 11188691
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagtatt 900  Q
    ||||||||||||  |||| ||||||||||||||||| || ||||||| | || ||||||| ||||| |||| || ||||||||    
T  11188609 ttgcattgaaaactgaaagtgacattcattttgaaataatttttttgctaaaatgacactcattttaaaacggaaggagtatt 11188691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 816 - 898
Target Start/End: Complemental strand, 16792521 - 16792439
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||| |||   ||| |||||||||||||||||||| ||||||| | ||| |||||| ||||| |||| |||||||||    
T  16792521 tattgcattggaaactcaaagtgacattcattttgaaacaatttttttgctaaagcgacactcattttaaaacggatggagta 16792439  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 716
Target Start/End: Complemental strand, 35799378 - 35799324
Alignment:
Q  662 aaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  35799378 aaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 35799324  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 900
Target Start/End: Original strand, 441346 - 441433
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt---gttgaagtgacacttattttgaaacagatggagtatt 900  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||   | | ||  ||||||||||||||||| || ||||||||    
T  441346 tattgcattgaaaacagaaagtgacattcattttgaaacaatttttttttggctaaaacgacacttattttgaaacggagggagtatt 441433  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 898
Target Start/End: Complemental strand, 12342131 - 12342047
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||| ||| ||||| |||||||||||||||||||| ||||||  ||| ||  |||||| |||||||||| || ||||||    
T  12342131 tattgcattggaaaccgaaagtgacattcattttgaaacaattttttttggttaaaacgacactcattttgaaacggaaggagta 12342047  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 810 - 899
Target Start/End: Complemental strand, 18579211 - 18579117
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaact-tttttgttg----aagtgacacttattttgaaacagatggagtat 899  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||| | |||||||||    ||  |||||||||||| |||| ||||||||||    
T  18579211 aattattattgcattgaaaactgaaagtgacattcattttgaaacaattctttttgttggttaaaacgacacttattttaaaacggatggagtat 18579117  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 818 - 897
Target Start/End: Original strand, 776001 - 776081
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaa-cttttttgttgaagtgacacttattttgaaacagatggagt 897  Q
    |||||||||||||  |||  |||||||||||||||||||  ||||||| | ||| |||||| |||||||||| ||||||||    
T  776001 ttgcattgaaaatgtaaagcgacattcattttgaaacaattttttttgctaaagcgacactcattttgaaacggatggagt 776081  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 716
Target Start/End: Complemental strand, 14286116 - 14286053
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    |||||||||||||||||||||| |||| | |||  || ||||||||| |||||||||||||||||    
T  14286116 acatattaagaaatgcaatgattaaaagaaagaggat-attattttatcaaattatccttattaa 14286053  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 22620301 - 22620365
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 716  Q
    ||||||||| |||||||||||| |||| | ||| |||| ||||||||| ||||||||||| ||||    
T  22620301 acatattaaaaaatgcaatgattaaaagaaagagaatggttattttactaaattatccttgttaa 22620365  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 4133062 - 4133015
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  4133062 tattgcattggaaaccgaaagtgacattcattttgaaacaattttttt 4133015  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 899
Target Start/End: Original strand, 7042317 - 7042384
Alignment:
Q  832 gaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagtat 899  Q
    ||||||||||||||||||||||||| ||||||| | ||  | |||| ||||| |||| ||||||||||    
T  7042317 gaaaatgacattcattttgaaacaatttttttgataaaacggcactcattttaaaacggatggagtat 7042384  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 29396795 - 29396842
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  29396795 tattgcattggaaaccgaaagtgacattcattttgaaacaattttttt 29396842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 789 - 862
Target Start/End: Original strand, 4658323 - 4658394
Alignment:
Q  789 ggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaacttttt 862  Q
    |||||||||| ||||||| |  |||| |||| |||||||||  ||||| ||||||||||||||||||| |||||    
T  4658323 ggtacaattgaaaagaaaaa--attattattacattgaaaaatgaaaaagacattcattttgaaacaatttttt 4658394  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 837 - 899
Target Start/End: Complemental strand, 4536591 - 4536527
Alignment:
Q  837 tgacattcattttgaaacaactttttt--gttgaagtgacacttattttgaaacagatggagtat 899  Q
    |||||||||||||||||||| ||||||  | | |||||||||| |||||||||| || |||||||    
T  4536591 tgacattcattttgaaacaattttttttggctaaagtgacactcattttgaaacggagggagtat 4536527  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 810 - 863
Target Start/End: Original strand, 12566089 - 12566142
Alignment:
Q  810 aattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    ||||| |||||||||| |||  |||| |||||||||||||||||||| ||||||    
T  12566089 aattattattgcattggaaactgaaagtgacattcattttgaaacaattttttt 12566142  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 898
Target Start/End: Complemental strand, 29808849 - 29808768
Alignment:
Q  817 attgcattgaaaatcgaaaatgacattcattttgaaacaacttttttgttgaagtgacacttattttgaaacagatggagta 898  Q
    |||||||||||||  |||| ||||||||||||| |||||| |||||   | ||  ||||||||||||||||| || ||||||    
T  29808849 attgcattgaaaactgaaagtgacattcattttaaaacaattttttgaataaaacgacacttattttgaaacggagggagta 29808768  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 900
Target Start/End: Original strand, 37038881 - 37038966
Alignment:
Q  816 tattgcattgaaaatcgaaaatgacattcattttgaaacaacttttt-tgttgaagtgacacttattttgaaacagatggagtatt 900  Q
    ||||||||||||||  |||| ||||||||||||| |||||| |||||  | | || ||| ||| ||||| ||||||||||||||||    
T  37038881 tattgcattgaaaactgaaagtgacattcattttaaaacaattttttggggtaaaatgatactcattttaaaacagatggagtatt 37038966  T

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Target: scaffold0332 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 652 - 715
Target Start/End: Original strand, 3777 - 3840
Alignment:
Q  652 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 715  Q
    ||||| |||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  3777 acataataagaaatgcaatgattaaaagaaagaaaatgattattttaccaaattatccttatta 3840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 784 - 863
Target Start/End: Original strand, 3895 - 3972
Alignment:
Q  784 tggaaggtacaattggaaagaaatacaattagtattgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||| |||||||||| ||||||| |   ||| ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  3895 tggagggtacaattgaaaagaaaaag--ttattattgcattgaaaactgaaagtgacattcattttgaaacaaatttttt 3972  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 832 - 891
Target Start/End: Original strand, 1544 - 1604
Alignment:
Q  832 gaaaatgacattcattttgaaacaacttttttg-ttgaagtgacacttattttgaaacaga 891  Q
    |||| |||||||||||||||||||| ||||||| || ||  ||||||||||||||||||||    
T  1544 gaaagtgacattcattttgaaacaatttttttgattaaaacgacacttattttgaaacaga 1604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 863
Target Start/End: Original strand, 70571 - 70616
Alignment:
Q  818 ttgcattgaaaatcgaaaatgacattcattttgaaacaactttttt 863  Q
    |||||||||||||  ||| |||||||||||||||||||| ||||||    
T  70571 ttgcattgaaaatgtaaagtgacattcattttgaaacaattttttt 70616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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