View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-10 (Length: 695)
Name: NF3291-Insertion-10
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 12 - 695
Target Start/End: Original strand, 10062012 - 10062695
Alignment:
| Q |
12 |
attgactcttgagtgtttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcattttcgactttcacatcaatgtttctt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
10062012 |
attgactcttgagtgtttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcatattagactttcacatcaatgtttctt |
10062111 |
T |
|
| Q |
112 |
tatggtgttatgcatttatcaccttccttatactcaaaagaacaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatcatgtg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10062112 |
tatggtgttatgcatttatcaccttccttatactcaaaagatcaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatcatatg |
10062211 |
T |
|
| Q |
212 |
tcctcaaaatccattaatcatgtcttttcacagttaagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaatagg |
311 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10062212 |
tcctcaaaatcaattaatcatgtcttttcacacttaagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttggtattaaaaatagg |
10062311 |
T |
|
| Q |
312 |
tgcattccaactgagaagaataaaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacagattttggtaagcttaactctgcctctag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10062312 |
tgcattccaactgagaagaataaaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacggattttggtaagcttaactctgcctctag |
10062411 |
T |
|
| Q |
412 |
tgtgatagcgatttgtttaaattcaactatgcaataggctgtagcactgctatagacgctatttaacatgaggggatgcaaaatgacagtcacgttctta |
511 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10062412 |
tgtgatagcgatttgtttaaattcaactatgcaatagactgtagcactgctatagacgctatttaacatgaggggatgcaaaatgacagccacgttctta |
10062511 |
T |
|
| Q |
512 |
aaagaatgacaagatcaaattataaccttcaacaagagtaacgatattggagcaaaacatagtttttgtactgtccgaatgcgtacttcacaacaaatca |
611 |
Q |
| |
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| T |
10062512 |
aaagaatgacaagatcgaattataaacttcaacaagagtaacgatattggagcaaaccacagtttttgtactgtccgaatgcgtacttcacaacaaatca |
10062611 |
T |
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| Q |
612 |
agagtttttgtgtcaatcaaacgtataaagttgctcccttcctttctggcaaaaccaacgaccaggggtaaaaaactcatcaag |
695 |
Q |
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| T |
10062612 |
agagtttttgtgtcaatcaaacgtataaagttgctcccttcctttctggcaaaaccaacgaccaggggtaaaaaactcatcaag |
10062695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 8e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 334 - 483
Target Start/End: Original strand, 739171 - 739320
Alignment:
| Q |
334 |
aaacaggctgtgacttttctgttttgctgcaatatcagaataaaacacagattttggtaagcttaactctgcctctagtgtgatagcgatttgtttaaat |
433 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
739171 |
aaacaggctgcgacttttctgttttgctgcaatatcagaataaaacacagattttgataagcttaactctgcttctagtgtgatagcaatttgtttaaat |
739270 |
T |
|
| Q |
434 |
tcaactatgcaataggctgtagcactgctatagacgctatttaacatgag |
483 |
Q |
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| T |
739271 |
tcaactatgcaataggctatagcgctgttataggcgctatttaacatgag |
739320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 562 - 695
Target Start/End: Original strand, 740128 - 740261
Alignment:
| Q |
562 |
agcaaaacatagtttttgtactgtccgaatgcgtacttcacaacaaatcaagagtttttgtgtcaatcaaacgtataaagttgctcccttcctttctggc |
661 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| || |
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| T |
740128 |
agcaaaacacagtttttgtactgtccgaatgtgtacttcacaacaaatcaagagttttcttgtcattcaaacgtataaagttgctccgttcctttctcgc |
740227 |
T |
|
| Q |
662 |
aaaaccaacgaccaggggtaaaaaactcatcaag |
695 |
Q |
| |
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||||||||| |||||||| || |||||||||||| |
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| T |
740228 |
aaaaccaacaaccaggggaaacaaactcatcaag |
740261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 738740 - 738835
Alignment:
| Q |
28 |
ttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcattttcgactttcacatcaatgtttctttatggtgttatgca |
125 |
Q |
| |
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| T |
738740 |
ttttgaaaagaagcatcaagcaaacaatacgagaagagcaaatttgtgttattttcattttagacttt--catcaatgttcctttctggtattatgca |
738835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 484 - 559
Target Start/End: Original strand, 739716 - 739791
Alignment:
| Q |
484 |
gggatgcaaaatgacagtcacgttcttaaaagaatgacaagatcaaattataaccttcaacaagagtaacgatatt |
559 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||| |||||| |||||||||| |
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| T |
739716 |
gggatgcaaaatgacagccacattcttaaaagaatgataagatcaaattataatcttccacaagaataacgatatt |
739791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 5e-55; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 7134071 - 7133887
Alignment:
| Q |
148 |
aaagaacaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatca--tgtgtcctcaaaatccattaatcatgtcttttcacagt |
245 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||| | | |||||| ||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
7134071 |
aaagaacaaagagcaaatttgtggctgctcgtcctgctaaggtcactgaaacattgatcaaatgtgtcctcaaaatccattaatcatgtcttttcactct |
7133972 |
T |
|
| Q |
246 |
taagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaataggtgcattccaactgagaaga |
330 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||| ||||| || |||||||| |
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| T |
7133971 |
taagcttcaatggctatttcagcagtaacacataaatggccttgtttgctttgtatcacaaataggtacattcaaattgagaaga |
7133887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 7125249 - 7125065
Alignment:
| Q |
148 |
aaagaacaaaaagcaaatttgtggttgctcgtcctgctaagtttattgaaaccttgatcatgt--gtcctcaaaatccattaatcatgtcttttcacagt |
245 |
Q |
| |
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|||||||||| |||||| ||| |||||||||||||||| || | | |||| ||||||| || |||||||||| |||||||||| |||||||||| | |
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| T |
7125249 |
aaagaacaaagagcaaagttgcggttgctcgtcctgctgaggacactcaaacattgatcaagtatgtcctcaaaacccattaatcacgtcttttcactct |
7125150 |
T |
|
| Q |
246 |
taagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaataggtgcattccaactgagaaga |
330 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| | |||||||| |||||||| |||||||| |
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| T |
7125149 |
taagcttcaatgactatttcagcagtaacacataaatgacattgtttgctttgtatcacaaataggtacattccaattgagaaga |
7125065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 7128568 - 7128468
Alignment:
| Q |
230 |
catgtcttttcacagttaagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttgatattaaaaataggtgcattccaactgagaag |
329 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||| | | | ||||||| |||||||| ||||||| |
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| T |
7128568 |
catgtcttttcactcttaagattcaatggctattttagcagtaacacataaacgaccttgtttgctttgtgtcacaaataggaacattccaattgagaag |
7128469 |
T |
|
| Q |
330 |
a |
330 |
Q |
| |
|
| |
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|
| T |
7128468 |
a |
7128468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 7125383 - 7125288
Alignment:
| Q |
28 |
ttttgtaaagaagcatcaagcaaacaacatgagaagagcaaatttgtgttagtttcattttcgactttcacatcaatgtttctttatggtgttatgca |
125 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |||||| |||||||||| |||| || | ||||||| |
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| T |
7125383 |
ttttgaaaagaagcatcaagcaaacaacacgagaagagctcatttgtgtttgtttcattttagacttt--catcaatgttcctttctgatattatgca |
7125288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 7128651 - 7128590
Alignment:
| Q |
126 |
tttatcaccttccttatactcaaaagaacaaaaagcaaatttgtggttgctcgtcctgctaag |
188 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||| |||||| ||||||| ||||||||||| |
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| T |
7128651 |
tttatcacctttcttatactcaaa-gaacaaagagcgaatttgcggttgctagtcctgctaag |
7128590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 11956945 - 11956905
Alignment:
| Q |
148 |
aaagaacaaaaagcaaatttgtggttgctcgtcctgctaag |
188 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||| |
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| T |
11956945 |
aaaggacaaagagcaaatttgtggttgctcgtcctgctaag |
11956905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 416 - 448
Target Start/End: Original strand, 3596288 - 3596320
Alignment:
| Q |
416 |
atagcgatttgtttaaattcaactatgcaatag |
448 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
3596288 |
atagcgatttgtttaaattcaactacgcaatag |
3596320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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