View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291-Insertion-12 (Length: 486)

Name: NF3291-Insertion-12
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291-Insertion-12
NF3291-Insertion-12
[»] chr8 (17 HSPs)
chr8 (6-486)||(12028608-12029088)
chr8 (236-366)||(12139549-12139680)
chr8 (362-484)||(12140042-12140164)
chr8 (66-158)||(12139838-12139929)
chr8 (6-113)||(12040347-12040453)
chr8 (305-366)||(12040585-12040646)
chr8 (284-332)||(12031642-12031690)
chr8 (284-332)||(12052793-12052841)
chr8 (284-332)||(15978326-15978374)
chr8 (284-332)||(12059641-12059689)
chr8 (284-332)||(19109878-19109926)
chr8 (301-366)||(12031580-12031645)
chr8 (284-329)||(19123895-19123940)
chr8 (284-329)||(19144888-19144933)
chr8 (66-102)||(12029199-12029235)
chr8 (304-348)||(19123955-19123999)
chr8 (304-348)||(19144948-19144992)


Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 6 - 486
Target Start/End: Original strand, 12028608 - 12029088
Alignment:
Q  6 cagataacttatagctcaaaaccataatagtagataccttcggggtggtagcatgtgtaaggaacaaatcttcacaaggggaatttataaacctatatgg 105  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12028608 cagataacttatagctcaaaaccataacagtagataccttcggggtggtagcatgtgtaaggaacaaatcttcacaaggggaatttataaacctatatgg 12028707  T
Q  106 caatcaaccccacaagacgaaaaaacaataaataagtatctaatatactaatattatgtaggaccgtttattgtttctttcttttacagtggaatttatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12028708 caatcaaccccacaagacgaaaaaacaataaataagtatctaatatactaatattatgtaggaccgtttattgtttctttcttttacagtggaatttatg 12028807  T
Q  206 caatgagtataggagatccgaagtccctaaaatttgtcgcactcttcgtctccagcagtatgtgtcagtaaccacatcgaaacttaataaagcagtcaac 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12028808 caatgagtataggagatccgaagtccctaaaatttgtcgcactcttcgtctccagcagtatgtgtcagtaaccacattgaaacttaataaagcagtcaac 12028907  T
Q  306 aaaaccatttgatacttccatgaaacacgtttaaaatattacatgtctaaaatgcaagaaatttaccctgatcagcagctaacaaacttgagcttgattg 405  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12028908 aaaaccatttgatacttccatgaaacatgtataaaatattacatgtctaaaatgcaagaaatttaccctgatcagcagctaacaaacttgagcttgattg 12029007  T
Q  406 gcgtggttccccgggaattgacaaggcagatgatttcttcctaggactgggaacaatgggagttcgtattttagttgattt 486  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12029008 gcgtggttccccaggaattgactaggcagatgatttcttcctaggactgggaacaatgggagttcgtattttagttgattt 12029088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 236 - 366
Target Start/End: Complemental strand, 12139680 - 12139549
Alignment:
Q  236 aatttgtcgcactcttcgtctccagcagtat-gtgtcagtaaccacatcgaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaacacg 334  Q
    ||||||||||||||||| ||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12139680 aatttgtcgcactcttcatctccagcagtacagtgtcagtaacgacattgaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaacaca 12139581  T
Q  335 tttaaaatattacatgtctaaaatgcaagaaa 366  Q
    |||||||| ||||||||| |||||||||||||    
T  12139580 tttaaaattttacatgtccaaaatgcaagaaa 12139549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 362 - 484
Target Start/End: Complemental strand, 12140164 - 12140042
Alignment:
Q  362 agaaatttaccctgatcagcagctaacaaacttgagcttgattggcgtggttccccgggaattgacaaggcagatgatttcttcctaggactgggaacaa 461  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||||| |||| |||| ||||||||||| |||| ||||||| ||||||| |||||    
T  12140164 agaaatttaccctgatcagcagctaacgaatccgagcttgattggcgtggtcccccaggaagtgacaaggcagctgatgtcttcctgggactggaaacaa 12140065  T
Q  462 tgggagttcgtattttagttgat 484  Q
    ||||||||| |||||||||||||    
T  12140064 tgggagttcttattttagttgat 12140042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 12139929 - 12139838
Alignment:
Q  66 ggaacaaatcttcacaaggggaatttataaacctatatggcaatcaaccccacaagacgaaaaaacaataaataagtatctaatatactaata 158  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||    
T  12139929 ggaataaatcttcacaaagggaatttagaaacctatatggcaatcaactccacaagatg-aaaaacaataaataagtatctaatatactaata 12139838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 12040347 - 12040453
Alignment:
Q  6 cagataacttatagctcaaaaccataatagtagataccttcggggtggtagcatgtgtaaggaacaaatcttcacaaggggaatttataaacctatatgg 105  Q
    |||||||| |||| ||||||||||||| |||||| || ||| ||  ||||||||||||| || ||||||||| |||| ||||||||||||||||||||||    
T  12040347 cagataacatataactcaaaaccataacagtagaaactttcaggagggtagcatgtgta-ggtacaaatcttaacaaagggaatttataaacctatatgg 12040445  T
Q  106 caatcaac 113  Q
    ||||||||    
T  12040446 caatcaac 12040453  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 12040585 - 12040646
Alignment:
Q  305 caaaaccatttgatacttccatgaaacacgtttaaaatattacatgtctaaaatgcaagaaa 366  Q
    |||||||||||||||||| |||||||||| ||||||| |||| ||||| |||||||||||||    
T  12040585 caaaaccatttgatacttacatgaaacacatttaaaagattatatgtccaaaatgcaagaaa 12040646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 12031642 - 12031690
Alignment:
Q  284 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaaca 332  Q
    |||||||||||||||| |||||||||| |||| ||||||||||||||||    
T  12031642 gaaacttaataaagcattcaacaaaacaatttaatacttccatgaaaca 12031690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 12052793 - 12052841
Alignment:
Q  284 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaaca 332  Q
    |||||||||||||||| |||||||||| |||| ||||||||||||||||    
T  12052793 gaaacttaataaagcattcaacaaaacaatttaatacttccatgaaaca 12052841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 15978374 - 15978326
Alignment:
Q  284 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaaca 332  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  15978374 gaaacttaataaagcattcaacaaaaccatttaatacttcaatgaaaca 15978326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 12059641 - 12059689
Alignment:
Q  284 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaaca 332  Q
    ||||||||||||| || ||||||||||||| | ||||||||||||||||    
T  12059641 gaaacttaataaaccattcaacaaaaccatataatacttccatgaaaca 12059689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 19109926 - 19109878
Alignment:
Q  284 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaaca 332  Q
    |||||||||||||||| |||||||||||| || ||||||| ||||||||    
T  19109926 gaaacttaataaagcattcaacaaaaccacttaatacttcaatgaaaca 19109878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 12031580 - 12031645
Alignment:
Q  301 tcaacaaaaccatttgatacttccatgaaacacgtttaaaatattacatgtctaaaatgcaagaaa 366  Q
    ||||||||| ||||| |||||||||||||| |  ||||||||||||||| ||   |||||||||||    
T  12031580 tcaacaaaatcatttaatacttccatgaaatatatttaaaatattacatatcctgaatgcaagaaa 12031645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 19123940 - 19123895
Alignment:
Q  284 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaa 329  Q
    ||||| |||||||||| ||||||||||||||| ||||||| |||||    
T  19123940 gaaacataataaagcattcaacaaaaccatttaatacttcaatgaa 19123895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 19144933 - 19144888
Alignment:
Q  284 gaaacttaataaagcagtcaacaaaaccatttgatacttccatgaa 329  Q
    ||||| |||||||||| ||||||||||||||| ||||||| |||||    
T  19144933 gaaacataataaagcattcaacaaaaccatttaatacttcaatgaa 19144888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 12029199 - 12029235
Alignment:
Q  66 ggaacaaatcttcacaaggggaatttataaacctata 102  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  12029199 ggaacaaatcttcacaaagggaatttagaaacctata 12029235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 19123999 - 19123955
Alignment:
Q  304 acaaaaccatttgatacttccatgaaacacgtttaaaatattaca 348  Q
    |||||| |||||||||||||||||||| |  ||||||||||||||    
T  19123999 acaaaatcatttgatacttccatgaaatatatttaaaatattaca 19123955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 19144992 - 19144948
Alignment:
Q  304 acaaaaccatttgatacttccatgaaacacgtttaaaatattaca 348  Q
    |||||| |||||||||||||||||||| |  ||||||||||||||    
T  19144992 acaaaatcatttgatacttccatgaaatatatttaaaatattaca 19144948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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