View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-13 (Length: 522)
Name: NF3291-Insertion-13
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 120 - 516
Target Start/End: Complemental strand, 49011719 - 49011322
Alignment:
| Q |
120 |
attcaaattcaaatagagaaacaattattactttcatcactctcaaatccaataccacgacctttcctagtattctgttttcggggaacattatctctca |
219 |
Q |
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| T |
49011719 |
attcaaattcaaatagagaaacaattattactttcatcactctcaaatccaataccaagacctttcctagtattctgttttcggggaacattatctctca |
49011620 |
T |
|
| Q |
220 |
aatcattcaaggccagaagactgactgtaagctctaaaaccttgaaaatctgggtgagcattgggattaaatgtggcacgaacgttgagagagtgaggga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49011619 |
aatcattcaaggccagaagactgactgtaagctctaaaaccttgaaaatctgggtgagcattgggattaaacgtggcacgaacgttgagagagtgaggga |
49011520 |
T |
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| Q |
320 |
actgcaagggatgattattgtgtttgtacaccatttattatggtgttat--ttttgttgaggaatttattatggtgttatattttgctatatatcgaaga |
417 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49011519 |
actgcaagggatgattattgtatttgtacaccatttattatggtgttattttttttttgaggaatttattatggtgttatattttgctatatatcgaaga |
49011420 |
T |
|
| Q |
418 |
ttatatatagtaagtacgtgttgatgatattaataataatgcaaattctatgaagtagctagaatatgtcacattttatgtgggatatatggcttcgtt |
516 |
Q |
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| T |
49011419 |
ttatatatagt-actacgtgttgatgatattaataataatgcaaattctatgaagtagctagaatatgtcaaattttatgtgggatatatggcttcgtt |
49011322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 166 - 333
Target Start/End: Complemental strand, 49007637 - 49007474
Alignment:
| Q |
166 |
atccaataccacgacctttcctagtattctgttttcggggaacattatctctcaaatcattcaaggccagaagactgactgtaagctctaaaaccttgaa |
265 |
Q |
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| T |
49007637 |
atccaataccacgacctttccttgtcttctgttttcggggaacattatctctcatatcattcaaggccagaagactg----taagctctaaaaccttgaa |
49007542 |
T |
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| Q |
266 |
aatctgggtgagcattgggattaaatgtggcacgaacgttgagagagtgagggaactgcaagggatga |
333 |
Q |
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| T |
49007541 |
aatctgggcgagcattgggattaaatgtggcaaaaacgttgagagagtgagggagctgcaagggatga |
49007474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 49011758 - 49011699
Alignment:
| Q |
8 |
gtttttaagttaaaagttattaatttttcaacgccaaagattcaaactcaaatagagaaa |
67 |
Q |
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| T |
49011758 |
gtttttaagttaaaagttattaatttttcaacgccaaagattcaaattcaaatagagaaa |
49011699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 166 - 333
Target Start/End: Complemental strand, 38180440 - 38180277
Alignment:
| Q |
166 |
atccaataccacgacctttcctagtattctgttttcggggaacattatctctcaaatcattcaaggccagaagactgactgtaagctctaaaaccttgaa |
265 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38180440 |
atccaataccacgacctttccttgtcttctgttttcggggaacattatctctcagatcattcaaggccagaagactg----taagctctaaaaccttgaa |
38180345 |
T |
|
| Q |
266 |
aatctgggtgagcattgggattaaatgtggcacgaacgttgagagagtgagggaactgcaagggatga |
333 |
Q |
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| T |
38180344 |
aatctgggtgagcattgggattaaatgtggcacgaacgttgagagagtgagggagctgcaagggatga |
38180277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 166 - 333
Target Start/End: Complemental strand, 11203539 - 11203376
Alignment:
| Q |
166 |
atccaataccacgacctttcctagtattctgttttcggggaacattatctctcaaatcattcaaggccagaagactgactgtaagctctaaaaccttgaa |
265 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11203539 |
atccaataccacgacctttccttgtcttctgttttcggggaacattatctctcaaatcattcaaggccagaagactg----taagctctaaaaccttgaa |
11203444 |
T |
|
| Q |
266 |
aatctgggtgagcattgggattaaatgtggcacgaacgttgagagagtgagggaactgcaagggatga |
333 |
Q |
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| T |
11203443 |
agtctgggtgagcattgggattaaatgtggcatgaacgttgagagagtgagggagctgcaagggatga |
11203376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 436 - 522
Target Start/End: Complemental strand, 38184052 - 38183963
Alignment:
| Q |
436 |
tgttgatgatattaataataat---gcaaattctatgaagtagctagaatatgtcacattttatgtgggatatatggcttcgttcttctg |
522 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||| |
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| T |
38184052 |
tgttgatgatattaataataataatgcaaattctatgaagtagctagaatgtgtcacattttatgtgggatatattgtttctttcttctg |
38183963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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