View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-15 (Length: 321)
Name: NF3291-Insertion-15
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-15 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 28926960 - 28927275
Alignment:
| Q |
8 |
tcaagaaagatacaagatggctaattgtcatggtgggatcaaatgcataaatgtgtatcacactaacaaaagtaattgaatttcctacgataaaggcaaa |
107 |
Q |
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| T |
28926960 |
tcaagaaagatacaagatggctaattgtcatggtgggatcaaatgcataaatgtgtatcacactaacaaaagtaattgaatttcctacggtaaaggcaaa |
28927059 |
T |
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| Q |
108 |
aataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaatgaagcatcatgacccaggcatttagcatgataggttttaaggcaat |
207 |
Q |
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| T |
28927060 |
aataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaaggaagcatcatgacccaggcatttagcatgataggttttaaggcaat |
28927159 |
T |
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| Q |
208 |
ccctttaatcaaccataaaaaagaaagtcacacaaaaatgtcatttacaaaatgatccaagtatccaacagtaaaacatgctaacgatagtgatc--aag |
305 |
Q |
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| T |
28927160 |
ccctttaatcaaccataaaaaagaaagtcacacaaaaatgtcatttacaaaatgatccaagtatccaacagtaaaacatgctaacgatagtgatcaaaag |
28927259 |
T |
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| Q |
306 |
ctttgcttcataaaaa |
321 |
Q |
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| T |
28927260 |
ctttgcttcataaaaa |
28927275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 28903934 - 28904094
Alignment:
| Q |
79 |
gtaattgaatttcctacgataaaggcaaaaataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaatgaagcatcatgacccag |
178 |
Q |
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| T |
28903934 |
gtaattgaatgccctataataaaggcaaaaataaacggtgaagcagcttaccacaacaccacctatcgtcattcttcaaaaaggaagcatcttgttttac |
28904033 |
T |
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| Q |
179 |
gcatttagcatgataggttttaaggcaatccctttaatcaaccataaaaaagaaagtcaca |
239 |
Q |
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| T |
28904034 |
acattcagcatgataggttttaaggcaatccctgtaatcaaccataaaaaagaaagtcaca |
28904094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 319
Target Start/End: Original strand, 28893991 - 28894218
Alignment:
| Q |
103 |
gcaaaaataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaatgaagcatcatgacccaggcatttagcatgataggttttaag |
202 |
Q |
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| T |
28893991 |
gcaaaagtaaacggtgaagcaacttaccacaacaccaattatcatcatttgtcaaaaaggaatcatctttccccaggcattcagcatgataggttttaag |
28894090 |
T |
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| Q |
203 |
gcaatccctttaatcaaccataaaaaagaaagtcac--acaaaa-------atgtcatttacaaaatgatccaagtatccaacagtaaaacatgctaacg |
293 |
Q |
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| T |
28894091 |
gcaattcctgtaatcaaccataaaaaagaaagtcacaaacaaaaccaaaatatgtc-tttacataatgattttagtatccaacagtaaaacatactaatg |
28894189 |
T |
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| Q |
294 |
atagtgat---caagctttgcttcataaa |
319 |
Q |
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| T |
28894190 |
atagtgatgaccaagctttggttcataaa |
28894218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 28938554 - 28938687
Alignment:
| Q |
97 |
ataaaggcaaaaataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaatgaagcatcatgacccaggcatttagcatgataggt |
196 |
Q |
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| T |
28938554 |
ataaaggcaaaaataaacattaaagca-cttaccacaacaccaataatcgtcattcttcagaaaggaatcatcttggccaacacaattagcatgataggt |
28938652 |
T |
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| Q |
197 |
tttaaggcaatccctttaatcaaccataaaaaaga |
231 |
Q |
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| T |
28938653 |
tttaaggcaattcctttaatcaaccataaaaaaga |
28938687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 28917730 - 28917870
Alignment:
| Q |
99 |
aaaggcaaaaataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaatgaagcatcatgacccaggcatttagcatgataggttt |
198 |
Q |
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| T |
28917730 |
aaaggcaaaaataaacggtgaagcagcttaccacaacaccacctattgtcattcgtcaaaaaggaggcatcttgtttcacacattccgcgtgataggctt |
28917829 |
T |
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| Q |
199 |
taaggcaatccctttaatcaaccataaaaaagaaagtcaca |
239 |
Q |
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| T |
28917830 |
taaagcaatccctgtaatcaaccataaaaaagaaaatcaca |
28917870 |
T |
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