View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3291-Insertion-18 (Length: 238)
Name: NF3291-Insertion-18
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 50548193 - 50548419
Alignment:
| Q |
8 |
attttgtgacgcggttcaatctaatcctaagtttatacacttccactccacaaaatttttcattaattgtatgtccggcaggatcttctttaattgcaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50548193 |
attttgtgacgcggttcaatctaatcctaagtttatacacttccactccacaaaatttttcattaattgtatgtccggcaggatcttctttaattgcaaa |
50548292 |
T |
|
| Q |
108 |
tagatgtatcggaaaatagctttataatgtacatgcaaaaagtaagagttctgaaatgaaagttatgttggcataatgcattcctctcttcctatatact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50548293 |
tagatgtatcggaaaatagctttataatgtacatgcaaaaagtaagagttctgaaatgaaagttatgttggcataatgcattcctctcttcctatataat |
50548392 |
T |
|
| Q |
208 |
taaactagtctgtgaaccttatgcttt |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
50548393 |
taaactagtctgtgaaccttatgcttt |
50548419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University