View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-2 (Length: 1056)
Name: NF3291-Insertion-2
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 285 - 956
Target Start/End: Complemental strand, 6564655 - 6563978
Alignment:
| Q |
285 |
tagtttgccgttttttgaaggaagtttgattgattacctgaagagtggtgtgctctctggtactcatgttaccactttcacacaaaacaagaaacaaaat |
384 |
Q |
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| T |
6564655 |
tagtttgccgttttttgaaggaagtttgattgattacctgaagagtggtgtgctctctgctactcatgttaccactttcacacaaaacaagaaacaaaat |
6564556 |
T |
|
| Q |
385 |
aatgcaatctaatgaaatactacagcagaaaaaggtagtaaaaacatgcgcaaagttatgctaactctgataaagtgaatctgcaaaacagtaaccaata |
484 |
Q |
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| T |
6564555 |
aatgcaatctaatgaaatactacagcagaaaaaggtagtaaaaacatgcacaaagttatgctaactctgataaagtgaatctgcaaaacagtaaccaata |
6564456 |
T |
|
| Q |
485 |
attcacaaacaacagagaaaaagagaaactgagaaaggttttatacaattcatggagcgggaaaaagaagaaaaaatggtttttgttttatacaaataat |
584 |
Q |
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| T |
6564455 |
attcacaaacaacagagaaaaagagaaactgagaaaggttttatacaattcatggagcgggaaaaagaagaaaaaatggtttttgttttatacaaataat |
6564356 |
T |
|
| Q |
585 |
aaaataatatggaagaagaaggtgaaaacaaatgagaaggacgaggtttgtttaaggtgttacatatacgacctcatataatgactaatgaaagtgttac |
684 |
Q |
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| T |
6564355 |
aaaaaaatatggaagaagatggtgaaaacaaatgagaaggacgaggtttgtttaaggtgttacatatacgacctcatataatgactaatgaaagtgttac |
6564256 |
T |
|
| Q |
685 |
agttgttgcttgtgtaaagtaccaatatgggataatgatgacaacaatgagacaaattctgaactgagatgtttaatgatatttattactgtgttacatg |
784 |
Q |
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| T |
6564255 |
agttgttgcttgtgtaaagtaccaatatgggataatgatgacaacaatgaaacaaattctgaactgagatgtttaatgatatttattactgtgttacatg |
6564156 |
T |
|
| Q |
785 |
catattgctaacaatttaatgttgttgacagacatagataaggacagaaaaattcctttttcttagtgaaactgctactatgcgt-attaatgatacttc |
883 |
Q |
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| T |
6564155 |
catattgctaacaattaaatgttgttgacagacatagataaggacataaaaattcc-ttttcttagtgaaactgctactatgcgtaattaatgatacttc |
6564057 |
T |
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| Q |
884 |
aaggatgggtgatgcttt-atattc-aggat-aatctattaatagtttatc---aaaaatggat-aatgtataataaaaa |
956 |
Q |
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| T |
6564056 |
aaggatgggtgatgctttaataatcaaggataaatctatt-atagtttatcaaaaaaaatggataaatgtataataaaaa |
6563978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 6564946 - 6564789
Alignment:
| Q |
7 |
agtggttagacttaagtagtccatgagtttcggtgaaaatcaaattgaccacgagtacgcaagtttagactatggcatgaataatctttgaccagtcttt |
106 |
Q |
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| T |
6564946 |
agtggttagacttaagtagtcgatgagtttcggtgaaaatcaaattgaccacgagtacgcaagtttagactatggcatgaataatctttgaccagtcttt |
6564847 |
T |
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| Q |
107 |
acttatcatatccaaattacgagagtccatttcctcggggccgaagggtaagaccaac |
164 |
Q |
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| T |
6564846 |
acttatcatatccaaattacgagagtccatttcctcggggccgaagggtaagaccaac |
6564789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 6564761 - 6564718
Alignment:
| Q |
180 |
aaccttaaatggtcatttgtttcttaagaccttacaatcaaacc |
223 |
Q |
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| T |
6564761 |
aaccttaaatggtcatttgtttcttaagaccttacaatcaaacc |
6564718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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