View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291-Insertion-3 (Length: 929)

Name: NF3291-Insertion-3
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291-Insertion-3
NF3291-Insertion-3
[»] chr5 (15 HSPs)
chr5 (191-709)||(36769753-36770271)
chr5 (148-385)||(36746613-36746846)
chr5 (8-115)||(36770294-36770401)
chr5 (198-375)||(36746874-36747044)
chr5 (774-911)||(36769547-36769689)
chr5 (224-385)||(36765399-36765555)
chr5 (256-382)||(36754277-36754397)
chr5 (498-624)||(36765157-36765281)
chr5 (424-491)||(36746538-36746605)
chr5 (142-183)||(36765568-36765609)
chr5 (50-181)||(36747032-36747162)
chr5 (143-179)||(36754214-36754250)
chr5 (424-491)||(36765323-36765390)
chr5 (50-180)||(36754434-36754562)
chr5 (207-241)||(36754185-36754219)


Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 191 - 709
Target Start/End: Complemental strand, 36770271 - 36769753
Alignment:
Q  191 gaagggatcttacatgcatgcattgatctttagagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcac 290  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36770271 gaagggatcttacatgcatccattgatctttagagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcac 36770172  T
Q  291 atgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggagaagatgatgatttcaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36770171 atgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaagactaaccaaacttgagggagaagatgatgatttcaa 36770072  T
Q  391 aaaacttcaccttagcctctttggttttctgtctctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattg 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36770071 aaaacttcaccttagcctctttggttttctgtctctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattg 36769972  T
Q  491 tagaatagaagtggcatatgttagctgatatttttccctttttaccctcagaagtataatgcaatacctacccctatcctaaggcatctagttctagtta 590  Q
    ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36769971 tagtataaaagtggaatatgttagctgatatttttccctttttaccctcagaagtataatgcaatacctacccctatcctaaggcttctagttctagtta 36769872  T
Q  591 agtcatgaatgggatgtttgttggattctctatcacatctgattgtagagtagtctagaagaaaatttatagattttgagttcaaaatttcaaattcaat 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36769871 agtcatgaatgggatgtttgttggattctctatcacatctgattgtagagtagtctagaagaaaatttatagattttgagttcaaaatttcaaattcaat 36769772  T
Q  691 aagttatattacaatcctc 709  Q
    |||||||||||||||||||    
T  36769771 aagttatattacaatcctc 36769753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 148 - 385
Target Start/End: Complemental strand, 36746846 - 36746613
Alignment:
Q  148 aattacatgcataaaactgattcttacatgcattgannnnnnn-gaagggatcttacatgcatgcattgatctttagagaataaatgcataatttcatta 246  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36746846 aattacatgcataaaactgattcttacatgcattgattttttctgaagggatcttacatgcatgcattgatctttagagaataaatgcataatttcatta 36746747  T
Q  247 gtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatct 346  Q
    || || ||||||| |     ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||    
T  36746746 gtgcatatgcatgta-----agctaccaactccagaacaaacacatgcaagcacatagttctaattttagaagatgttctcacatcaaaagtagaaatct 36746652  T
Q  347 aagacaagattaaccaaacttgagggagaagatgatgat 385  Q
    ||||||||| | ||||||||| | | ||| |||||||||    
T  36746651 aagacaagactcaccaaacttaaagaagatgatgatgat 36746613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 36770401 - 36770294
Alignment:
Q  8 actcccacacctaattttacactcacatattaacctcaatttatttaataaataaaaacgagcaagtcctttacttgaataagaaataaacctcagctat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36770401 actcccacacctaattttacactcacatattaacctcaatttatttaataaataaaaacgagcaagtcctttacttgaataagaaataaacctcagctat 36770302  T
Q  108 tcatcttt 115  Q
    ||||||||    
T  36770301 tcatcttt 36770294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 198 - 375
Target Start/End: Complemental strand, 36747044 - 36746874
Alignment:
Q  198 tcttacatgcatgcattgatctttagagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaag 297  Q
    |||||||||||| | |||||||||| |||||||||| ||||||| ||||||||||||||||    ||||||||||||| |||| ||||||||||||||||    
T  36747044 tcttacatgcattctttgatctttaaagaataaatgaataatttaattagtacacatgcat----ataaagctatcaagtccacaacaagcacatgcaag 36746949  T
Q  298 cacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggaga 375  Q
    |||||||||||||||||||||||||||||| ||| |||   | ||||||||||||||| | |||||||||||||||||    
T  36746948 cacatagctctaatttgagaagatgttctcacataaaa---aaaaatctaagacaagactcaccaaacttgagggaga 36746874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 774 - 911
Target Start/End: Complemental strand, 36769689 - 36769547
Alignment:
Q  774 gtggaagtttggccaatagttaaaatattggcttaattttacttttcatcctataatttttaaacttac-aaaatagtctcctctttt--aaatcgaata 870  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||||    
T  36769689 gtggaagtttgggcaatagttaaaatattggcttaattttacttttcatcctatattttttaagcttacaaaaatagtctcctctttttaaaatcgaata 36769590  T
Q  871 ttccggtcttcaa--tttttaatcattcaattgtcaaatttgt 911  Q
    |||||||||||||  ||||||||||||| ||||||||||||||    
T  36769589 ttccggtcttcaatttttttaatcattcgattgtcaaatttgt 36769547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 224 - 385
Target Start/End: Complemental strand, 36765555 - 36765399
Alignment:
Q  224 agaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaagcacatagctctaatttgagaagatgt 323  Q
    |||||||||||||||||||||||||| |||||||||||     |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  36765555 agaataaatgcataatttcattagtatacatgcatgca-----agctatcaactccagaacaagcacatgcaagcacatagttctaattttagaagatgt 36765461  T
Q  324 tctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggagaagatgatgat 385  Q
    |||| |||||||| ||||||||||| |||||| | ||||||||| | ||| || ||||||||    
T  36765460 tctcacatcaaaagtagaaatctaaaacaagactcaccaaacttaaaggataaaatgatgat 36765399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 256 - 382
Target Start/End: Complemental strand, 36754397 - 36754277
Alignment:
Q  256 catgcatataaagctatcaactccagaacaagcacatgcaagcacatagctctaatttgagaagatgttctcccatcaaaactagaaatctaagacaaga 355  Q
    ||||||||||||| ||||||||||| | |||||||||      | |||||||||||| |||||||||||||| |||||||| || |||||||||||||||    
T  36754397 catgcatataaagatatcaactccacagcaagcacat------atatagctctaattggagaagatgttctcacatcaaaagtaaaaatctaagacaaga 36754304  T
Q  356 ttaaccaaacttgagggagaagatgat 382  Q
     | |||||||||||  |||||||||||    
T  36754303 ctcaccaaacttgatagagaagatgat 36754277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 498 - 624
Target Start/End: Complemental strand, 36765281 - 36765157
Alignment:
Q  498 gaagtggcatatgttagctgatatttttccctttttaccctcagaagtataatgcaatacctacccctatcctaaggcatctagttctagttaagtcatg 597  Q
    ||||||| |||| |||| ||||||| ||||| |||||||||||  ||||||||  |||| |||||||||||||||||| ||||||| || | ||||||||    
T  36765281 gaagtggaatatattagatgatattattcccattttaccctcaagagtataatt-aatatctacccctatcctaaggcttctagttatactaaagtcatg 36765183  T
Q  598 aatgggatgtttgttggattctctatc 624  Q
    ||| |||| ||||||||||||||||||    
T  36765182 aat-ggatatttgttggattctctatc 36765157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 36746605 - 36746538
Alignment:
Q  424 tctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgt 491  Q
    |||||||||||||||| |||||||||| ||| |||||| ||||||||| | || ||||||||||||||    
T  36746605 tctctctagttcaagcggagcatgaggctgttgtgtgtctctttctttgttttgcagagagacattgt 36746538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 36765609 - 36765568
Alignment:
Q  142 tggtggaattacatgcataaaactgattcttacatgcattga 183  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  36765609 tggtggaattacatgcataaatctgattcttacatgcattga 36765568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 36747162 - 36747032
Alignment:
Q  50 atttaataaataaaaacgagcaagtcctttacttgaataagaaataaacctcagctattcatctttcctttctaataagccagtaaaatgtatggtgg-a 148  Q
    |||| ||| |||||||| ||||| |||||  | ||||||| ||||||||| || |||||||||||| ||| || | || | |||||||||| |||||| |    
T  36747162 atttcatagataaaaacaagcaaatccttctcctgaataacaaataaaccccatctattcatcttt-cttactcaaaaacaagtaaaatgtttggtggaa 36747064  T
Q  149 attacatgcataaaactgattcttacatgcatt 181  Q
    | ||||||||| ||||| |||||||||||||||    
T  36747063 actacatgcat-aaacttattcttacatgcatt 36747032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 36754250 - 36754214
Alignment:
Q  143 ggtggaattacatgcataaaactgattcttacatgca 179  Q
    |||||||||||||||||||||||||||||||||||||    
T  36754250 ggtggaattacatgcataaaactgattcttacatgca 36754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 36765390 - 36765323
Alignment:
Q  424 tctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgt 491  Q
    |||||||| ||||||| |||||||||| ||| |||||| ||||||||| | || ||||||||||||||    
T  36765390 tctctctaattcaagctgagcatgaggctgttgtgtgtctctttctttgttttgcagagagacattgt 36765323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 36754562 - 36754434
Alignment:
Q  50 atttaataaataaaaacgagcaagtcctttacttgaataagaaataaacctcagctattcatctttcctttctaataagccagtaaaatgtatggtggaa 149  Q
    |||| ||| |||| ||| ||||| |||||  | ||||||| |||||||||  | ||||||||||||| || || | || | |||||||||| ||||||||    
T  36754562 atttcatagataataacaagcaaatccttctcctgaataataaataaacccaatctattcatctttc-ttactcaaaaacaagtaaaatgtctggtggaa 36754464  T
Q  150 ttacatgcataaaactgattcttacatgcat 180  Q
     ||||||||| ||||| ||||||||||||||    
T  36754463 ctacatgcat-aaacttattcttacatgcat 36754434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 36754219 - 36754185
Alignment:
Q  207 catgcattgatctttagagaataaatgcataattt 241  Q
    |||||| ||||||||||||||||||||||||||||    
T  36754219 catgcaatgatctttagagaataaatgcataattt 36754185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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