View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-4 (Length: 871)
Name: NF3291-Insertion-4
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 209 - 838
Target Start/End: Complemental strand, 37636613 - 37635987
Alignment:
| Q |
209 |
attcacgagtgttttatgatttcaagtggggttctgttaatccgctttgtgtccagcttttacctttgccgacctctttttcagctggacagtacatatc |
308 |
Q |
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| T |
37636613 |
attcacgagtgttttatgatttcaagtgaggttctgttaatccgctttgtgtccagcttttacctttgccgacctctttttcagctggacagtacatatc |
37636514 |
T |
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| Q |
309 |
agtgtcacacttatataagggtagttaatcatcttaatcttcaataaaaagatgtacgtgaaaacaaaattcaaaattgtttgtatnnnnnnnctataaa |
408 |
Q |
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| T |
37636513 |
agtgtcacacttatataagggtagttaatcatctt------caataaaaagatgtacgtgaaaacaaaattcaaaattgtttctataaaaaaactataaa |
37636420 |
T |
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| Q |
409 |
attttaacatttgagataactcatatgtacaaaaccaacacatgaaagacatctctcattcaatacgtgacgtagactctttagtatacaaactttttct |
508 |
Q |
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| T |
37636419 |
attttaacatctgagagaactcatctgtacaaaaccaacacgtgaaagacatctctcattcaatacgtgacgtagactctttactatacgaactttttct |
37636320 |
T |
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| Q |
509 |
caaccatacgactttctcatgtgtctttaagtttgatcatcttgccccggttgagttttataatacaaagcggattactaacaatgcatttgtccaagtg |
608 |
Q |
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| T |
37636319 |
caaccatacgactttctcatgtgtctttaagtttgatcatcttgccccggttgagttttataatacaaagcggattactaacaatgcaattgtccaagtg |
37636220 |
T |
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| Q |
609 |
ataagagatttgggtcccttaagcatgttgtcaatagttcgatttctagctcaatatatgcaa--aaaatatgatttggagaggagaacccgcttcatgt |
706 |
Q |
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| T |
37636219 |
ataagagacttgggccacttaagcacgttgtcaatagttcgatttctagctcaatatatgcaaaaaaaatatggtttggagaggagaacccactttatgt |
37636120 |
T |
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| Q |
707 |
gcccaaaggctcaccgacgaaattaatcactcctaaacgacggaggaaacttcctattaatatcatgttaacctnnnnnnngttgtttgaattataaaat |
806 |
Q |
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| T |
37636119 |
gtccaaaggctccccgacaaaattaatcactcctaaacgacggaggaaacttcgtatcaatatcatgttaacctaaaaaaagttgtttgaattataaaat |
37636020 |
T |
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| Q |
807 |
tc-aaatatatatggtatatcgtcgaactagga |
838 |
Q |
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| T |
37636019 |
tcaaaatatatatggtatatcgtcgaactagga |
37635987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 37636731 - 37636644
Alignment:
| Q |
125 |
gttacattattcttacatgccataaaactcgatgttttgtttttagaggagtttaatatgtgggat-caaataacacttagcaatatt |
211 |
Q |
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| T |
37636731 |
gttacattattcttacatgccataaaacttgatgttttgtttttagaggagtttaatatgtgggatccaaataacacttagcaatatt |
37636644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 37636849 - 37636794
Alignment:
| Q |
7 |
atatcactgggttaaaaataaaacaatgctgaattaaaaagaagtatttctctcac |
62 |
Q |
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| T |
37636849 |
atatcactgggttaaaaataaaacaatgctgaattaaaaagaagtatttctctcac |
37636794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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