View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-5 (Length: 868)
Name: NF3291-Insertion-5
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 780; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 8 - 868
Target Start/End: Original strand, 32381947 - 32382807
Alignment:
| Q |
8 |
gagtggctcttggtgaaccaatcaccgattaggacggtgtaatcatcttcgggatcagcatatgggactggaatgagtaatctgctgttgatgcggaggc |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32381947 |
gagtggctcttggtgaaccagtcaccgattaggacggtgtaatcatcttcgggatcagcatatgggactggaatgagtaatctgctgttgatgcggaggc |
32382046 |
T |
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| Q |
108 |
caccgaaaccaccggctgctctgtgcatccctaagctaggataatagaagtagctaccgatttgatccttcacttggaaacggtatgtgtagtttgttcc |
207 |
Q |
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| T |
32382047 |
caccgaaaccaccggctgctctgtgcatccctaagctaggataatagaagtagctaccgatttgatccttcacttggaaacggtatgtgtagtttgttcc |
32382146 |
T |
|
| Q |
208 |
tggtgcgatgggacagtttgttcctggcacaccatcttgccaacagtttttcctttgctgaactccagccctgaaaatttgattatacattgcttggata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32382147 |
aggtgcgatgggacagtttgttcctggcacaccatcttgccaacagtttttcctttgctgaactccagccctgaaaatttgattatacattgcttagatt |
32382246 |
T |
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| Q |
308 |
tcatttattaattgatcaaatcnnnnnnnnnntaaacaaatttcaaatcacgatcaaatacaattgtcgtgttatagtctcggagaagcatcaaaataaa |
407 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
32382247 |
tcatttattaattgatcaaatcaaaaacaaaataaacaaatttcaaatcacgatcaaatacaattgtcgtgttatagtctcagagaggcatcaaaataaa |
32382346 |
T |
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| Q |
408 |
taaaaatcatataatgtcagcaatttgaaaatgaaatgagtatgtatgtaataccatgtgaaaagcaaaggctcgtcgagttcattgaagacgttaacaa |
507 |
Q |
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| T |
32382347 |
taaaaatcatataatgtc-gcaatttgaaaatgaaatgagtatatatgtaataccatgtgaaaagcaaaggctcgtcgagttcattgaagacgttaacaa |
32382445 |
T |
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| Q |
508 |
cgaggttattgttactggtggaattgatgttggggccgggaaattcgttgttgatgagaataacctgttgaggaacaccagcaggggaaagtgtaccata |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32382446 |
cgaggttattgttactggtggaattgatgttggggccgggaaattcgttgttgatgagaataacctgttgaggaacaccagcaggggagagtgtaccata |
32382545 |
T |
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| Q |
608 |
tgtaacatgccatgtgaaataaaagtaagggtcttcacccattaccattgatgttgtaccaatcaagagacataacataaacaaaaacgttgttctctcc |
707 |
Q |
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| T |
32382546 |
tgtaacatgccatgtgaaataaaagtaagggtcttcacccattaccattgatgttgtaccaatcaagagacataacataaacaaaaacgttgttctctcc |
32382645 |
T |
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| Q |
708 |
attttgctttgatcctgattaacaattactatcttatactatgttgtaatggaataaagaactaagatgagaacatttacatgatggttcaatgatttgt |
807 |
Q |
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| T |
32382646 |
attttgctttgatcgtgattaacaattactatcttatactatgttgtaatggaataaagaactaagatgagaacatttacatgatggttcaatgatttgt |
32382745 |
T |
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| Q |
808 |
catg-tatatacatatgtgtaagtgtttattaaccattcaaactctccgttaacctctctaa |
868 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382746 |
catgttatatacatatgtgtaagtgtttattaaccattcaaactctccgttaacctctctaa |
32382807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 600 - 646
Target Start/End: Original strand, 5884248 - 5884294
Alignment:
| Q |
600 |
gtaccatatgtaacatgccatgtgaaataaaagtaagggtcttcacc |
646 |
Q |
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| T |
5884248 |
gtaccataggtaacattccatgtgaagtaaatgtaagggtcttcacc |
5884294 |
T |
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