View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-6 (Length: 516)
Name: NF3291-Insertion-6
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 43912374 - 43912501
Alignment:
| Q |
8 |
tcttggacttctagagaaattgaagatgcagaaaatgcttccttgctcgtggctgctgatgttatttatagtgatgacctgactgatgcattcttcatca |
107 |
Q |
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| T |
43912374 |
tcttggacttctagagaaattgaagatgcagaaaatgcttctttgctcctggctgctgatgttatttatagtgatgacctgactgatgcattct---tca |
43912470 |
T |
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| Q |
108 |
gtaccatagagagattaatgtgaaggagttc |
138 |
Q |
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| T |
43912471 |
gtaccttagagagattaatgtcaaggggttc |
43912501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 259 - 417
Target Start/End: Complemental strand, 10273199 - 10273040
Alignment:
| Q |
259 |
tctagcatcggacgctcctcttccttggtacttgcctagagacaagagtcacgtgtcacttagcagcttctgtttaacggctgttggacgccttttcacc |
358 |
Q |
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|||||| |||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||| |
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| T |
10273199 |
tctagcttcggactctcctcttccttggtacttgcctttagacaagagtcacttctcacttagcagctttcgtctaacggctgttggacgccttttcact |
10273100 |
T |
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| Q |
359 |
agaaatatggtattgcttctgaatataacagctaat-tatatttcactttacgcacttta |
417 |
Q |
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| T |
10273099 |
agaaatatggtattgtttctgaacataatagctaatgtttatttcactttacacacttta |
10273040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 10274274 - 10274163
Alignment:
| Q |
137 |
tcataattgatatgtttaatcttatttgataacacaggctgatttcatgaagatgccattcgaagacaatagttttgatgcagtgtatgctattgaaacc |
236 |
Q |
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| T |
10274274 |
tcataattgacatgcttaatcttatttgataatgcaggctgatttcatgaagatgccattcgaagacaatagttttgatgcagtgtatgctattgaagcc |
10274175 |
T |
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| Q |
237 |
acctgccatgca |
248 |
Q |
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|||||||||||| |
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| T |
10274174 |
acctgccatgca |
10274163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 3385035 - 3384939
Alignment:
| Q |
8 |
tcttggacttctagagaaattgaagatgcagaaaatgcttccttgctcgtggctgctgatgttatttatagtgatgacctgactgatgcattcttca |
104 |
Q |
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| T |
3385035 |
tcttggacttctagagaaattgaagatgcagaaaatgcttcctcgctcctggctgctgatgttatttatagtgatgacctgacagatgcattcttca |
3384939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 3384940 - 3384863
Alignment:
| Q |
171 |
caggctgatttcatgaagatgccattcgaagacaatagttttgatgcagtgtatgctattgaaaccacctgccatgca |
248 |
Q |
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| T |
3384940 |
caggctgatttcatgaagatgccattcgaagacaatagttttgatgcagtgtatgctattgaagccacctgccatgca |
3384863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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