View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-7 (Length: 789)
Name: NF3291-Insertion-7
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 8 - 779
Target Start/End: Original strand, 34790666 - 34791431
Alignment:
| Q |
8 |
actaaatcattgtttgtctttgagcggtttccaagggttagtttatatggccttgtttgcaatttgatcactgctattttctggtatcgttagcattagg |
107 |
Q |
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| T |
34790666 |
actaaatcattgtttctctttgagtggtttccaagggttagtttatatggccttgtttacaatttgatcactgctattttctggtatcgttagcattagg |
34790765 |
T |
|
| Q |
108 |
aggcttgttgactacgatattctgtgttaaatttgttgataaaacaannnnnnnnnnnnnnnnnnnnnnnnncctacttcattcttctcaatttgatttt |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
34790766 |
aggcttgttgactacgatattctgtgttaaatttgttattaaaacaatttttcttttctttttgtcttttttcctacttcattcttctcaatttgatttt |
34790865 |
T |
|
| Q |
208 |
gcagaatcgaagaattcatcgactatttattccctgaggaaacacagacaaccaatctcaagttcttcgaagctgcttacaaatggaagaagaaaagatc |
307 |
Q |
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| T |
34790866 |
gcagaatcgaagaattcatcgactatctattccctgaggaaacacagacaaccaatctcaagttcttcgaagctgcttacaaatggaagaagaaaagatc |
34790965 |
T |
|
| Q |
308 |
gtcttctgctgatgaataagagtatcttgtagcttggcatgattccattcttgtataaccagcaaatactgtagcttaagcttaagtcaagcaaagcaac |
407 |
Q |
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| T |
34790966 |
gtcttctgctgatgaataagagtatcttgtagcttggcatgattccattcttgtataaccagcaaatactgtagcttaagcttaagtcaagcaaagcaac |
34791065 |
T |
|
| Q |
408 |
taagtcaattctgggctattgaagtttgtagcagaggaataatgtagtttcttattcaagaaaaagtatgcaacagagaccaacatttgagaaaaatctg |
507 |
Q |
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| T |
34791066 |
taagtcaattctgggctattgaagtttgtagcagaggaataatgtagtttcttattcaagaaaaagtatgcaacagagaccaacatttgagaaaaatctg |
34791165 |
T |
|
| Q |
508 |
cattcctaaaattgggaattgatgaaagtcatggttgtaacttgatgtag-tgtgttttttcgacattaatgaaatgtgtaaggtcgggtaccaaaggca |
606 |
Q |
| |
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| T |
34791166 |
cattcctaaaattgtgaattgatgaaagtcatggttgtaacttgatgtagttgtg-tttttcgtcattaatgaaatgtgtaaggtc-ggtaccaaagtca |
34791263 |
T |
|
| Q |
607 |
attattgagtgtgtacatatgtcaataactacaactttactgtgttacccgtttagatttctttgaattcaaaacattaacgtacttaatgctttaagta |
706 |
Q |
| |
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| T |
34791264 |
attattgagtgtgtacatatgtcaataactacaactttactgtgttacacgtttaga-ttctttgaattctaaacattaacgtacttaatgcttt-agta |
34791361 |
T |
|
| Q |
707 |
ttatatatactatttttccttctggatatctatataactttgatttatagtacaataatttctttttgagggg |
779 |
Q |
| |
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| T |
34791362 |
ttatatatacta-ttttccttctagatatctatataac-ttgatttatagtacaat-atttctttttgagggg |
34791431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 521
Target Start/End: Complemental strand, 2288111 - 2287615
Alignment:
| Q |
7 |
aactaaatcattgtttgtctttgagcggtttccaagggttagtttatatggccttgtttgcaatttgatcactgctattttct-ggtatcgttagcatta |
105 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||| |
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| T |
2288111 |
aactaactcattgtttgtctttgagtggtttccaagggttagtttatatggccttgtttgcaatttggtcactgctagtttctgggtatcattagcatta |
2288012 |
T |
|
| Q |
106 |
gg--aggcttgttgactacgatattctgtgttaaatttgttgataaaacaannnnnnnnnnnnnnnnnnnnnnnnncctacttcattcttctcaatttga |
203 |
Q |
| |
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|| ||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
2288011 |
ggcttggcttgttgactatgatatcctgtgttaaatttgttaataaaacaatttagtttttctttttgttttttttcctacttcattcttctcaatttga |
2287912 |
T |
|
| Q |
204 |
ttttgcagaatcgaagaattcatcgactatttattccctgaggaaacacagacaaccaatctcaagttcttcgaagctgcttacaaatggaagaagaaaa |
303 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||| || | |||||||||||||||||||||||| ||| |
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| T |
2287911 |
ttttgcagaatcgaagaatttatcgactatctattccctgaggaaacgcatacaaccaatctcaagatcatggaagctgcttacaaatggaagaagcaaa |
2287812 |
T |
|
| Q |
304 |
gatcgtcttctgctgatgaataagagtatcttgtagcttggcatgattccattcttgtataa-ccagcaaatactgtagcttaagcttaagtcaagcaaa |
402 |
Q |
| |
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|| || || ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| | || |
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| T |
2287811 |
aattgt------ctaatgaataagagtatcttgtagcttggcatgattccattcttttataacccggcaaatactgtagcttaagtt-----------aa |
2287729 |
T |
|
| Q |
403 |
gcaactaagtcaattctgggctattgaagtttgtagcagaggaataatgtagtttcttattcaagaaaaagtatgcaacagagaccaacatttgagaaaa |
502 |
Q |
| |
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||| ||||||||||| |||| |||| ||||||||| |||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||| || |
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| T |
2287728 |
gcagctaagtcaattttgggttattaaagtttgtaacaga-----aatgtagtttcttatttaagaaaaagtacgcaacagagaacaacatttgagataa |
2287634 |
T |
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