View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291-Insertion-9 (Length: 745)
Name: NF3291-Insertion-9
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Original strand, 40586145 - 40586668
Alignment:
| Q |
8 |
aagataccatttgttggaggtgttgtatatggagctggagc------aggagctggaggtggagttggataaggagcaagtggaactggcattataaaat |
101 |
Q |
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| T |
40586145 |
aagataccatttgttggaggtgttgtatatggagctggagctggagcaggagctggaggtggagttggataaggagcaagtggaactggcattataaaag |
40586244 |
T |
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| Q |
102 |
aactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccattcattttttcaactcctggaaaaggaagaaatatagta |
201 |
Q |
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| T |
40586245 |
aactaagtcaaaagtattatttttctgtgccaaattctacaaacagaacaaagcacttccatccattttttcaactcctggaaaaggaagaaatatagta |
40586344 |
T |
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| Q |
202 |
aaagattcattcaagagggagnnnnnnngtgattaacttggtaggttgaaaaggaaacctttgaagcaaaagattggtagaatatcaaatcaaaaaccag |
301 |
Q |
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| T |
40586345 |
aaagattcattcaagagggagaaaaaaagtgattaacttggtaggttgaaaaggaaacctttgaagcaaaagattggtagaatatcaaatcaaaaaccag |
40586444 |
T |
|
| Q |
302 |
ataaagtgagagtcaaaggaaaagcttcctccttgaaa-taaaaaaccatgcatgaagctggaggaagatggtccagaagtgatgaagaatttaagacac |
400 |
Q |
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| T |
40586445 |
ataaagtgagagtcaaaggaaaagcttcctccttgaaaataaaaaaccatgcatgaagctggaggaagatagtccagaagtgatgaacaattgaagacac |
40586544 |
T |
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| Q |
401 |
tgtcactatatttatat-attttattgagttatgtgtgataaagggaagaattgtacatnnnnnnnnnnnnnnnnnat---gttacttgtacaatggcaa |
496 |
Q |
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| T |
40586545 |
tgtcactatatttatattattttattgagttatgtgtgataaagggaagaattgtacattatatataatatataatataatgttacttgtacaatggcaa |
40586644 |
T |
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| Q |
497 |
gtaacaactttgttagtagttgct |
520 |
Q |
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| T |
40586645 |
gtaacaactttgttagtagttgct |
40586668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 567 - 745
Target Start/End: Original strand, 40586715 - 40586892
Alignment:
| Q |
567 |
gatatgagtggatgtacactaaaaagaaatggactaaagagatgctatatatgctatgtgaaagaaacgcaactatttttcaccttcattttcttttcta |
666 |
Q |
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| T |
40586715 |
gatatgagtggatgtacactaaaaagaaatggactaaagagatgctatatatgctatgtgaaagaaacgcaactatttttcaccttcattttcttttcta |
40586814 |
T |
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| Q |
667 |
gcaaatggtgttccaatattatgagagtaaacattttgnnnnnnnnataggtttaagttttgatgctagctaaatttga |
745 |
Q |
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| T |
40586815 |
gcaaatggtgttccaatattatgagagtaaacattttg-tttttttataggtttaagttttgatgctagctaaatttga |
40586892 |
T |
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