View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291R-Insertion-1 (Length: 990)

Name: NF3291R-Insertion-1
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291R-Insertion-1
NF3291R-Insertion-1
[»] chr5 (1 HSPs)
chr5 (9-946)||(1717380-1718314)
[»] chr1 (23 HSPs)
chr1 (228-848)||(14508565-14509190)
chr1 (506-671)||(6326682-6326850)
chr1 (506-682)||(28239057-28239236)
chr1 (507-653)||(47569148-47569297)
chr1 (550-714)||(14470505-14470673)
chr1 (508-651)||(28231486-28231632)
chr1 (606-691)||(14507249-14507334)
chr1 (506-572)||(671023-671089)
chr1 (508-570)||(677203-677265)
chr1 (647-704)||(14485064-14485121)
chr1 (521-583)||(2289011-2289073)
chr1 (520-566)||(21159183-21159229)
chr1 (609-678)||(12535398-12535467)
chr1 (536-671)||(12540578-12540716)
chr1 (520-568)||(28326317-28326365)
chr1 (160-208)||(2289364-2289412)
chr1 (609-664)||(12532934-12532989)
chr1 (165-208)||(12540128-12540171)
chr1 (608-653)||(4872625-4872670)
chr1 (597-654)||(28326400-28326457)
chr1 (524-580)||(12535502-12535558)
chr1 (720-808)||(47569331-47569418)
chr1 (506-549)||(4251618-4251661)
[»] chr2 (2 HSPs)
chr2 (506-714)||(9066270-9066484)
chr2 (600-684)||(9068553-9068637)
[»] chr3 (1 HSPs)
chr3 (520-679)||(47924836-47924995)
[»] chr6 (1 HSPs)
chr6 (526-675)||(384619-384768)


Alignment Details
Target: chr5 (Bit Score: 836; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 9 - 946
Target Start/End: Original strand, 1717380 - 1718314
Alignment:
Q  9 gaattgtggttaggtgccatgctctctcaaggtattggttccatatccaattacaacactcttttctcttactttgcgacatgggggcatacaccgctgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717380 gaattgtggttaggtgccatgctctctcaaggtattggttccatatccaattacaacactcttttctcttactttgcgacatgggggcatacaccgctgt 1717479  T
Q  109 tatttctcatgctcaacaattggaatcccggtctgatcagattcaggttttcccagacattgatacttggaaaatcctcatcacttgtcactctagaaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717480 tatttctcatgctcaacaattggaatcccggtctgatcagattcaggttttcccagacattgatacttggaaaatcctcatcacttgtcactctagaaaa 1717579  T
Q  209 tgtaagatggcttcagctttctctttattctataaacttatcaagtccggtcatcatcctagtacttccaccttgaatgatcttttccatggtctttttc 308  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717580 tgtaagatggcttcagctttctctttattctataaactcatcaagtccggtcatcatcctagtacttccaccttgaatgatcttttccatggtctttttc 1717679  T
Q  309 tccaaggtgagatgcacaaagtatttcccttttataatgatgtcttattaaagggttttaagttagacgagactagttattattttctaatcagtgggtt 408  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717680 tccaaggtgggatgcacaaagtatttcccttttataatgatgtcttattaaagggttttaagttagacgagactagttattattttctaatcagtgggtt 1717779  T
Q  409 atgtaagataggagaaactgaaaaagccatagagttgttgagacaggtacagattgacggcggctacatagatttttatgtcaagtcattctataactca 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717780 atgtaagataggagaaactgaaaaagccatagagttgttgagacaggtacagattgacggcggctacatagatttttatgtcaagtcattctataactca 1717879  T
Q  509 tattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatcaccccttgtgttgtcacatatcataa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717880 tattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatcaccccttgtgttgtcacatatcataa 1717979  T
Q  609 tctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatggatccaagtgtttatgtt 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717980 tctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatggatccaagtgtttatgtt 1718079  T
Q  709 cctactgaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctgggttatcactcggtgattggt 808  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1718080 cctactgaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgct-ggttatcactcggtgattggt 1718178  T
Q  809 gaaaccatacaagggagaaggacaaatcgataagattgcacaatttgggtggaaaacattgtgatgttacaaattaaaactttgcgggtacaatttcgac 908  Q
    | |||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||| || |||||||||| ||||||||| ||||||| ||||||    
T  1718179 g-aaccatacaaaggagaaggacaaatcgataagattgcacaatt--ggtgg-aaacattgcgacgttacaaatt-aaactttgccggtacaa-ttcgac 1718272  T
Q  909 t-cgatta--tatgggtatgattata-caaagagactattta 946  Q
    | ||||||  ||||| |||||||||| |||||||||||||||    
T  1718273 tccgattaattatggttatgattataccaaagagactattta 1718314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 228 - 848
Target Start/End: Complemental strand, 14509190 - 14508565
Alignment:
Q  228 tctctttattctataaacttatcaagtccggtcatcatcctagtacttccaccttgaatgatcttttccatggtctttttctccaaggtgagatgcacaa 327  Q
    ||||||||||  ||||| | |||||| |||||||||||||||||||| | | |||||||||||||||| | |||||||  |||||||||||||| || ||    
T  14509190 tctctttatttgataaaatcatcaagaccggtcatcatcctagtactcctatcttgaatgatcttttcgaaggtctttccctccaaggtgagattcataa 14509091  T
Q  328 agtatttcccttttataatgatgtcttattaaagggttttaagttagacgagactagttattattttctaatcagtgggttatgtaagataggagaaact 427  Q
    || ||| | | |||| |||||| ||||||| |||||||||||||||||| |   ||||||| || ||||||||   ||||||||||||||||||||||||    
T  14509090 agcattgctcgtttacaatgatttcttattgaagggttttaagttagactatgttagttatgatattctaatcgaagggttatgtaagataggagaaact 14508991  T
Q  428 gaaaaagccatagagttgttgagacaggtacagattgacggcggctacatagatttttatgtcaagtcattctataac----tcatattcagactatgca 523  Q
    |||||||||||||||||||||||||||||| |||||||||  ||||| |   ||||| |||||| |||||||||||||    ||||||||||||||||||    
T  14508990 gaaaaagccatagagttgttgagacaggtaaagattgacgatggctatagcaattttaatgtcaggtcattctataacaatatcatattcagactatgca 14508891  T
Q  524 aagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatcaccccttgtgttgtcacatatcataatctaatctatggtta 623  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||  |||  || | ||||||||||||||||||||||||||||    
T  14508890 aagatagacgtgtaaaccaagcctatgatttatattctgaaatgattgttaagaagatcaatcctgatgctatcacatatcataatctaatctatggtta 14508791  T
Q  624 ttgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatggatccaagtgtttatgttc---------ctact 714  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||          ||||    
T  14508790 ttgcatcgtcggtcaatttaaacaagcaattgccttgtttagaaaattggaggc------atacatggatccaagtgtttatgttcttacgttagttact 14508697  T
Q  715 gaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctgggttatcactcggtgattggtgaaacc 814  Q
    ||| |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||  ||| |||||||||||||| || |||     
T  14508696 gaaggagaggtgaaagctgctaaaagtacaatcgctctaatgataaaaggtggtgtcaaacctattgttgct-agttttcactcggtgattgatg-aact 14508599  T
Q  815 atacaagggagaaggacaaatcgataagattgca 848  Q
    |||||| |||||||||| | | ||||||||||||    
T  14508598 atacaaaggagaaggacgagttgataagattgca 14508565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 506 - 671
Target Start/End: Complemental strand, 6326850 - 6326682
Alignment:
Q  506 tcatattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaa---agaacatcaccccttgtgttgtcacata 602  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||   |   | | | |||  |||  ||||||||| ||    
T  6326850 tcatactcagactctgcaaagatagacttgcaaaccaagcctatgatttatattctgaaatgattcatactcacaccttcaagcctgatgttgtcactta 6326751  T
Q  603 tcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaatt 671  Q
     ||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||| ||||||    
T  6326750 ccatcatctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgtttaaaaaatt 6326682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 506 - 682
Target Start/End: Original strand, 28239057 - 28239236
Alignment:
Q  506 tcatattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgat---tgtaaagaacatcaccccttgtgttgtcacata 602  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||   ||| || ||||||| ||||  |  |  ||||||    
T  28239057 tcatatacaggctctgcaaagatagacttgtaaaccaagcctatgatttgtattctgaaatgattcatgttaacaacatcagccctgattcttgcacata 28239156  T
Q  603 tcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaa 682  Q
    |  | ||||| ||||||||||||||||| | |||||||||||||| ||||||| ||| |||| | |||||||||||||||    
T  28239157 tagtcatctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttctttatagaattggaggcattaa 28239236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 507 - 653
Target Start/End: Original strand, 47569148 - 47569297
Alignment:
Q  507 catattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgatt---gtaaagaacatcaccccttgtgttgtcacatat 603  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   || || ||||||   |||  |  |  |||||||    
T  47569148 catattcagactctgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattcacgttaacaacatcgagcctaattataccacatat 47569247  T
Q  604 cataatctaatctatggttattgcatcgttggtcaatttaaacaagcaat 653  Q
    || ||||||| |||||||||||||||| | |||||||| |||||||||||    
T  47569248 caaaatctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 550 - 714
Target Start/End: Complemental strand, 14470673 - 14470505
Alignment:
Q  550 gatttatattctgaaatgattgtaaagaacatcaccccttgtgttgtcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaag 649  Q
    |||||||||| ||||||||||||  |||| ||||  | | ||  | |||||| || ||||||||||| ||||| ||||||| |||||||||||||| |||    
T  14470673 gatttatattttgaaatgattgtttagaagatcatacgtagttgtatcacatgtcgtaatctaatctttggttgttgcatcattggtcaatttaaaaaag 14470574  T
Q  650 caattgccttgtttagaaaattggaggcattaaaata----catggatccaagtgtttatgttcctact 714  Q
    ||||||||||||||||| ||||||| |||| ||||||    ||||||||||||| ||||||||| ||||    
T  14470573 caattgccttgtttagagaattggaagcatcaaaatacatgcatggatccaagtttttatgttcttact 14470505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 508 - 651
Target Start/End: Original strand, 28231486 - 28231632
Alignment:
Q  508 atattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgat---tgtaaagaacatcaccccttgtgttgtcacatatc 604  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||   ||| || |||||||  ||| ||  |  |||||||     
T  28231486 atattcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcctggttgtcacacatata 28231585  T
Q  605 ataatctaatctatggttattgcatcgttggtcaatttaaacaagca 651  Q
       ||||||||||||||||||||||| | |||||||||||| |||||    
T  28231586 gacatctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 606 - 691
Target Start/End: Complemental strand, 14507334 - 14507249
Alignment:
Q  606 taatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatgg 691  Q
    ||||||||||| ||| | ||||||||||||||||||| || |||||||||||||||||||| ||||||  |||| |||||||||||    
T  14507334 taatctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaattggtagcatcaaaatacatgg 14507249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 671089 - 671023
Alignment:
Q  506 tcatattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgt 572  Q
    |||||||||| || ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  671089 tcatattcaggctgtgcaaagatagacttgtaaaccaaggctatggtttatattttgaaatgattgt 671023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 508 - 570
Target Start/End: Original strand, 677203 - 677265
Alignment:
Q  508 atattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgatt 570  Q
    ||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  677203 atatttagactctgcaaagatagacttgtacatcaagcctatgatttatattctgaaatgatt 677265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 647 - 704
Target Start/End: Complemental strand, 14485121 - 14485064
Alignment:
Q  647 aagcaattgccttgtttagaaaattggaggcattaaaatacatggatccaagtgttta 704  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  14485121 aagcaattgccttgtttagagaattggaagcatcaaaatacatggatccaagtgttta 14485064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 521 - 583
Target Start/End: Complemental strand, 2289073 - 2289011
Alignment:
Q  521 gcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatca 583  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||    
T  2289073 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatca 2289011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 520 - 566
Target Start/End: Complemental strand, 21159229 - 21159183
Alignment:
Q  520 tgcaaagatagacttgtaaaccaagcctatgatttatattctgaaat 566  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  21159229 tgcaaagatagacttataaaccaagcctatgatttatattctgaaat 21159183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 609 - 678
Target Start/End: Complemental strand, 12535467 - 12535398
Alignment:
Q  609 tctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggca 678  Q
    |||||||||||| |||||||||   |||||||||||||||||||||||| |||||||| ||||| |||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaattgccatgtttagagaattgaaggca 12535398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 536 - 671
Target Start/End: Original strand, 12540578 - 12540716
Alignment:
Q  536 taaaccaagcctatgatttatattctgaaatgattgtaaagaaca---tcaccccttgtgttgtcacatatcataatctaatctatggttattgcatcgt 632  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||| |   |||  ||||||  || || ||||     |||| ||||||| |||||||||      
T  12540578 taaacgaagcctatgatttattttctgaaatgattgttaagaagaagatcataccttgtaatgacatatattgctgtctagtctatggctattgcatcac 12540677  T
Q  633 tggtcaatttaaacaagcaattgccttgtttagaaaatt 671  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  12540678 tggtcaatttaagcaagcaattgccttgtttagagaatt 12540716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 28326317 - 28326365
Alignment:
Q  520 tgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatga 568  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  28326317 tgcaaagatagacttataaaccaagcttatgatttatattctgaaatga 28326365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 2289412 - 2289364
Alignment:
Q  160 cccagacattgatacttggaaaatcctcatcacttgtcactctagaaaa 208  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  2289412 cccagacattcatacttggtcaatcctcatcacttgtcactctagaaaa 2289364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 664
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  609 tctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgttta 664  Q
    |||||||||||| |||| ||||   |||||||||||||||||||||||||||||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 12540128 - 12540171
Alignment:
Q  165 acattgatacttggaaaatcctcatcacttgtcactctagaaaa 208  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  12540128 acattgatacttggaaaatcctcatcagttgtcactctaaaaaa 12540171  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 653
Target Start/End: Original strand, 4872625 - 4872670
Alignment:
Q  608 atctaatctatggttattgcatcgttggtcaatttaaacaagcaat 653  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||    
T  4872625 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 4872670  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 654
Target Start/End: Original strand, 28326400 - 28326457
Alignment:
Q  597 cacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaatt 654  Q
    |||||||||| ||||||||| ||| ||||| ||| | |||||||||||||||||||||    
T  28326400 cacatatcatcatctaatctttggctattgtatcatcggtcaatttaaacaagcaatt 28326457  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 12535558 - 12535502
Alignment:
Q  524 aagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaaca 580  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||  |||| |||||||    
T  12535558 aagatagacttgtaaacgaagcctatgctttattttctgaaatagttgttaagaaca 12535502  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 808
Target Start/End: Original strand, 47569331 - 47569418
Alignment:
Q  720 agaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctgggttatcactcggtgattggt 808  Q
    |||||||||| |||||||| || || ||||| | |||||||||||| |||||||||||| || ||||  |||||||||| || ||||||    
T  47569331 agaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgct-agttatcactctgttattggt 47569418  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 549
Target Start/End: Complemental strand, 4251661 - 4251618
Alignment:
Q  506 tcatattcagactatgcaaagatagacttgtaaaccaagcctat 549  Q
    |||||| ||| || ||||||||||||||||||||||||||||||    
T  4251661 tcatatccaggctctgcaaagatagacttgtaaaccaagcctat 4251618  T

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Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 506 - 714
Target Start/End: Original strand, 9066270 - 9066484
Alignment:
Q  506 tcatattcagactatgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatcaccccttgtgttgtcac------ 599  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||  |||||||| | ||||| ||||| | | ||  | ||||          
T  9066270 tcatattcagactatgtaaaggtagacctgtaaaccaagcctatgatttatattcacaaatgatttttaagaagatcacgcgtagttgtatcacattcac 9066369  T
Q  600 atatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatggatccaagt 699  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||| |||||    
T  9066370 atatcataatctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttagagaattagaggcattaaaatgcatggattcaagt 9066469  T
Q  700 gtttatgttcctact 714  Q
    ||| |||||||||||    
T  9066470 gttaatgttcctact 9066484  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 600 - 684
Target Start/End: Original strand, 9068553 - 9068637
Alignment:
Q  600 atatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaa 684  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||| ||||||| |||| ||||    
T  9068553 atatcataatctaatctatggctattgcatcgttggtcaatttaaacaagttgttgccttgtttagagaattggaagcataaaaa 9068637  T

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Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 520 - 679
Target Start/End: Complemental strand, 47924995 - 47924836
Alignment:
Q  520 tgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatcaccccttgtgttgtcacatatcataatctaatctatg 619  Q
    |||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||||||  ||| ||||  | ||||||||||| |||||||| |||    
T  47924995 tgcaaagatagactagtaaatcaagcctatgacttctattctgaaatgattgttaagaacataccccgttgttgtctcacatatcattatctaatcaatg 47924896  T
Q  620 gttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcat 679  Q
    | ||||||||| | ||| ||||||||||||| ||||||||| ||||| ||||||| ||||    
T  47924895 gctattgcatcatcggtgaatttaaacaagcgattgccttgcttagagaattggatgcat 47924836  T

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Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 526 - 675
Target Start/End: Complemental strand, 384768 - 384619
Alignment:
Q  526 gatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatcaccccttgtgttgtcacatatcataatctaatctatggttatt 625  Q
    |||| |||||| ||||||||||||| ||||| || ||||||| || | | |||||| |  |||  ||||||||||||||   ||||||||||||   |||    
T  384768 gataaacttgttaaccaagcctatgctttatgttatgaaatgtttcttaggaacattatgcctgatgttgtcacatatcggcatctaatctatgtccatt 384669  T
Q  626 gcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggag 675  Q
    |||||  | |||||||||||||||||||||||||||||| | ||||||||    
T  384668 gcatcactcgtcaatttaaacaagcaattgccttgtttaaagaattggag 384619  T

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